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Query: [S] COG5650 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDQKLDQQKVDRVSPGDSEPVARDFINAIGGRFGRFAQVGTQRFWTPLRVLITTSLVFLAMGFLTKANCIQGSRGTDGVVSLNWSGSRQYTSACYNDIVPLYGGRGIDAPGFPYAFSWQEGDLTRYMEYPVLGGIFQWICGIITRFLYPVVDVIPFHTLPESGLYFIVTALALAFFWVLVIRMMVELTGNRVWDTVLVAASPLVAVHAFTNWDTPAIAAVIGAMLAVKRGNPLVAGVLIGAGTAFKLWPLYLLGAYLVLAVKNKNLKPFITMAAAAAVTWLVVNVPVMIAYPKAWNEFLRLNRERGAEWTTIYQVIDRNLPINLNDPVLLNVLSFGLFGASCVAILILGLKVQRTPRVAELAFLIVAAFLLFNKVWSPQYSLWLVPLAVLAFPQWKVLFPWMVTDAMVWPILMWHMLGTDNKGLPHEMLDLIVISRDAFIVVMIVGVIRQMLGRRADPVMDAHAGRDLLAGPFGAGERRKALKEVSLast
1 -6.250sp|Q5T197|DCST1_HUMAN DC-STAMP domain-containing protein 1 OS=Homo sapiens GN=DCST1 PE=2 SV=1  ali   10  1..................NDLLKKRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCRRCVQAPETPESYVCRTLDCEAVYCWSCWDDM.................................................................................................................................................................................................................................................................................................................................................................................................... 82
2 -6.160sp|P01591|IGJ_HUMAN Immunoglobulin J chain OS=Homo sapiens GN=IGJ PE=1 SV=4  ali   15  19.........TSRIIRSSEDPNEDIVERNI--PLNNRENISDPT--SPLRTRFVYHLSDLC------KKCDPTEVELDNATQSNICDEDSATETCYT-----YDRNKCYTAVVPLVYGGETKMVETALTYP.................................................................................................................................................................................................................................................................................................................................................................... 136
3 -5.550sp|P42858|HD_HUMAN Huntingtin OS=Homo sapiens GN=HTT PE=1 SV=2  ali   11  31..................................................................................................................................................................................................................ENNLSRVIAAVSHELITSTTRALTFGCCEALCLLSTAFPVCIWS........................................................................................................................................................................................................................................ 74
4 -5.530sp|Q4ZHG4|FNDC1_HUMAN Fibronectin type III domain-containing protein 1 OS=Homo sapiens GN=FNDC1 PE=1 SV=4  ali   14  51FETSRPPTTTEPSTTATTPRVIPEEGAISSFPEEEFDLAGRKRFVAP-------------VTYLNK.................................................................................................................................................................................................................................................................................................................................................................................................................................... 104
5 -5.280sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3  ali   13  4LEYEGLHKSEAITTPGYNDPAGYAMNRYAGGEARCDAEAGRGDDYDPRELICGACSDVSFLEYKCRYCCSVAVF----------FGTTHFCNACHDDFQ................................................................................................................................................................................................................................................................................................................................................................................................... 120
6 -5.180sp|Q8IVM8|S22A9_HUMAN Solute carrier family 22 member 9 OS=Homo sapiens GN=SLC22A9 PE=2 SV=1  ali   10  16VHILDNDTVSDNDTGALSQDALLRIS-----PLDSNMRPEKCRRFVHPQWLLHLNGTFPNTSDADMEPCVD-----------GW----VYDRISFSS..................................................................................................................................................................................................................................................................................................................................................................................................... 94
7 -5.160sp|Q8N4F4|S22AO_HUMAN Solute carrier family 22 member 24 OS=Homo sapiens GN=SLC22A24 PE=2 SV=1  ali   13  14VPLLDNDSVSDNDTGTLSKDDLLRIS-----PLDSNLRPQKQRFIHPQWQLLHLNGTFPNTNEPDTEPCVD-----------GW----VYDRSSFLST.................................................................................................................................................................................................................................................................................................................................................................................................... 93
8 -5.050sp|A2VDJ0|T131L_HUMAN Transmembrane protein 131-like OS=Homo sapiens GN=KIAA0922 PE=1 SV=2  ali   14  5LSHNICNPMTVNSLPQYAEPSCPSLPAGPTGVEEDKGLYSPGDLWPTPPVCVT----SLNCTLENGVPCVIQESAPVHNSFIDWSA------TCEGQFSSAY---------CPLELNDYNAFPEENMNYA.................................................................................................................................................................................................................................................................................................................................................................... 116
9 -4.700tr|C9JVR0|C9JVR0_HUMAN Uncharacterized protein OS=Homo sapiens GN=SEC16A PE=4 SV=1  ali   8  6.....................................................................QSDYYASYYSSQYDYGDPGHWDRYHYSDRRYWCDAEYDAYRREHSAFGDRPEKRDNNWRYDP................................................................................................................................................................................................................................................................................................................................................................... 76
10 -4.700sp|O15027|SC16A_HUMAN Protein transport protein Sec16A OS=Homo sapiens GN=SEC16A PE=1 SV=3  ali   8  6.....................................................................QSDYYASYYSSQYDYGDPGHWDRYHYSDRRYWCDAEYDAYRREHSAFGDRPEKRDNNWRYDP................................................................................................................................................................................................................................................................................................................................................................... 76
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;