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Query: [K] KOG2181 LIM domain binding protein LDB1/NLI/CLIM, from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCVVIFLKFLFSDNGNNQHGTEAAFGRLAQSYRIQDLLFIIVIFFRAIHIMMFHRPPSARPPLNHVDQLKSLQATALGKPGMRSQATEPQPIGNTVSPLEFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEPEKPKPARKRQRKPAANPRGSKKATAAAAAAAAAATNGVPPTVPTASPANNQQFPPNPMTSQFQQMSYPDVMVVGEPSMMGSEFGENDERTISRVENSQYDPNAMQMQSLGQGPNSSMNINGRNMMNQHHPGMQPPPGQQHMPPHSMGSQMPTSMHNPMHMPPGSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNMMGSGMPPMSMSSQMPGSMSNPMPNQMPGGMQMNQMPPPNYSQYTGGPPPQWPPPNSAMITGLast
1 -5.970sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2  ali   14  17...................................................................................................KYRRRCLSERKRLGIGQSQEMNTLFRFWSFFLRDHFNKK---MYEEFRQLAWEDAKENYRYGLECLFRFYSYGLEKKFRR-EIFQDFQEETKKDYESGQLYGLEKFWAYLKYSQSKTQSI--DPKLQEYLCSFKRLEDFRV..................................................................................................................................................................................................................................................................................................................................................................................................... 151
2 -5.170sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2  ali   13  16...................................................................................................KYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKK---MYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRL-DIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDI--DPKLQEYLGKFRRLEDFRVDP................................................................................................................................................................................................................................................................................................................................................................................................... 152
3 -4.520sp|Q9ULF5|S39AA_HUMAN Zinc transporter ZIP10 OS=Homo sapiens GN=SLC39A10 PE=1 SV=2  ali   14  3.....YIEKLFERYGENGRLSFFGLEKLLTNLGLGERKVV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 37
4 -4.340sp|Q9UNS1|TIM_HUMAN Protein timeless homolog OS=Homo sapiens GN=TIMELESS PE=1 SV=2  ali   13  5..VRLFLRFL-----------ENCYNRLMGSVK-DHLYMWALAFFMAFNRAASFRPGLVSETLSVRTFHFIEQNLTNYYEMMLTDRKEAASWARRMHLALKAYQELLATVNEMDISPDEAVRESS--RIIKNNIFYVMEYRELFL-------------ALFRKFDERCQPRSFLRDLVETTHLFLKMLERFCRSRG................................................................................................................................................................................................................................................................................................................................................................................................................................................. 188
5 -4.170sp|Q8TDD5|MCLN3_HUMAN Mucolipin-3 OS=Homo sapiens GN=MCOLN3 PE=2 SV=1  ali   12  5......LKFFFMN---------WARGRKPWKLAIQILKIAMLVLFGL---------------------------------------------------------------SNQMVVAFKEENTIAFKHLFLKGY-MDRMDDTYAVYTQSDVYDQNQYLQLYNVSVGNHAYENKGTKQSAMAICQHFYKRGNIYPGNDTFIETECFFVEPDEPFHIGTPAENKLNLTLDFHRLLTVLQFKLKAINLQTVRHQE......................................................................................................................................................................................................................................................................................................................................................................................... 197
6 -4.120sp|Q5VZ89|DEN4C_HUMAN DENN domain-containing protein 4C OS=Homo sapiens GN=DENND4C PE=1 SV=2  ali   8  9..LVL-LESLLENEGDQVIHTS----SFINQHPI--IFWNLVWYFRRLDPSNLPGLILTSEHCNEGVQLPLSSLSQDSKLVYIQLLWDNINLHQEPREPLYVSWRNFNSEKKSSLLSEEQQETSTLVETIRQSIQHNNVLKPINLLSQQMKPGMKRQRSLYREIL---FDNEYGIAYNSLSSEILERLQKIDAPPSASVEWCRKC........................................................................................................................................................................................................................................................................................................................................................................................................................................ 221
7 -4.070sp|Q14573|ITPR3_HUMAN Inositol 1,4,5-trisphosphate receptor type 3 OS=Homo sapiens GN=ITPR3 PE=1 SV=2  ali   13  3...ISLVDLLAA-EGKNVY-TEI----KCTSLPLEDVVSVVT-------------------------------------------------HEDCITEVKMAYVNFVNHCYVDTEVEMKEYTSNHIWTLFEN--FTLDMARVCSKREKRVADPTLEKYVL--DTINAFFSSPFQTHQTIVVQLLQSTTRWLQQQHKGSVEACIRTLAMVAKGRAILLPMDLDAHISSMLS............................................................................................................................................................................................................................................................................................................................................................................................................... 190
8 -4.060sp|Q86UT6|NLRX1_HUMAN NLR family member X1 OS=Homo sapiens GN=NLRX1 PE=1 SV=1  ali   9  17..........GSGVSATPA-VQMLSRNLEGHHQIAAACFLSYCWLVCATLHFLHAPTPAGQTLTSIYTSFLRLNFSGETLDSTDPSNLSLMAYAARTMGKLAYEGVSSRKTYFSEEDVCGAGIRTEEEFQLLHIFRRD--ALRFFLAPCVEPGRAGTFVFTVPAMQEYLAA--------LYIVLGLRKTTLQKVGKEVAELVGRVGEDVSLVLGIMAKLLPLRALPLLFNLIKVVPRV-AQAMVLEMFREEDYYNDDVLDQMGASILGVEGPRRHPDEPPEDMFMGGLLSAHNRAVLAQLGCPIKNLDALE.............................................................................................................................................................................................................................................................................................................................. 333
9 -4.060tr|F8WDW8|F8WDW8_HUMAN Uncharacterized protein OS=Homo sapiens GN=CASD1 PE=4 SV=1  ali   12  49.C-----EYLLSSGRFLGEKVWQPHSCMMHKYKISMKTFL--LKWIFCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 96
10 -4.030sp|Q8IZK6|MCLN2_HUMAN Mucolipin-2 OS=Homo sapiens GN=MCOLN2 PE=2 SV=2  ali   8  4......LKFYFMSPCEK-----RARRQIPWKLGLQILKIVMLVRFGLSNQLVVAFKEDNTVAFKHLFLKGYSGTDEDDYSCSVYTQEDAYESIFFAINQYHQLKDITLGTLGYGENEDNRIGLKVCKQHYKKTLNIDNDVELDCVQLDLQDLSKKPPDWKNSSFFRLEFYRLLQ---VEISFHLKGI--DLQTIHSRELPDCYVFQNTIIFDNKAH-----SGKIKIYFDSDAKIEECKDLNIFGSTQKNAQYV....................................................................................................................................................................................................................................................................................................................................................................................... 249
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;