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Query: [E] KOG2380 Prephenate dehydrogenase (NADP+), from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAETLITKPPLSLSFTSLSSMLPSLSLSTANRHLSVTDTIPLPNSNSNATPPLRIAIIGFGNYGQFLAETLISQGHILFAHSRSDHSSAARRLGVSYFTDLHDLCERHPDVVLLCTSILSIENILKTLPFQRLRRNTLFVDVLSVKEFAKTLLLQYLPEDFDILCTHPMFGPQSVSSNHGWRGLRFVYDKVRIGEERLRVSRCESFLEIFVREGCEMVEMSVTDHDKFAAESQFITHTLGRLLGMLKLISTPINTKGYEALLDLAENICGDSFDLYYGLFVYNNNSLEVLERIDLAFEALRKELFSRLHGVVRKQSFEGEAKKVHVFPNCGENDASLDMMRSEDVVVKYEYNSQVSGSVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDYTDEAAKLGVSYFSDLDDLFEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQTLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLVENTAGDSFDLYYGLFLYNPNAMEQLERFHVAFESLKTQLFGRLHSQHSHELAKSSSPKTTKLLTSLast
1 -4.120sp|Q9Y5P8|P2R3B_HUMAN Serine/threonine-protein phosphatase 2A regulatory subunit B`` subunit beta OS=Homo sapiens GN=PPP2R3B PE=1 SV=2  ali   8  9.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QDSVNVDAVISKIESTFARFPHERAT---MDDMGLVAKACGCPLYWKGPLFYGAGGERTVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYLVQEDFVPFLQDV.............................. 114
2 -4.040sp|P42704|LPPRC_HUMAN Leucine-rich PPR motif-containing protein, mitochondrial OS=Homo sapiens GN=LRPPRC PE=1 SV=3  ali   18  19.............................................................................................................HCVTMNTPVEKLTDYCKKLKEVQMHSFPLQCALLANKTDLAKALMKAVKEEGFPIRPHPLL...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 86
3 -3.970tr|E7EQE5|E7EQE5_HUMAN Uncharacterized protein OS=Homo sapiens GN=DNAH3 PE=4 SV=1  ali   9  114......................................................................................................................................................................................................LNKWIPTCAQLFTSRKEHWIHFAPKSNYDSSRNIEEYFASVASFMSLQLRELVIKSLEDLVSLFMIHKD-FFIPQLIMIKLEVSEPII-----VFNPSFDGCWELIRD---LEIIKNSNGIPKVESVLFPELKGYNLLLGTVNAEEKLVSDFLIQTFKVFQKNQVGPCKYLNVYKKYVDLLDNTAEQN--------------------------IAAFLKENHDIDDFVTKINAIKKRRNEIASITVPLAMFCLDATALNHDLCERAQNLKDHLIQFQ------------------------------DVNRDTNTSICNQYSHIADKVSEV-PANTKELVSLIEFLKKSSAVTVFKLRRQLRDASERL--EFLMDYADLPYEDIKLNSTLFLWPDQIEDIFDNSRNLLLHKRDQAEMDLIKRYRESLGLSWK......... 495
4 -3.930sp|Q8TDH9|MUTED_HUMAN Protein Muted homolog OS=Homo sapiens GN=MUTED PE=1 SV=1  ali   9  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SAHLIIKDLGEIHSRLLDHRPVIQGETRYF---VKEFEEKRGLREMRVLENLKNMIHETNEHTLPK. 64
5 -3.920tr|C9JL81|C9JL81_HUMAN Uncharacterized protein OS=Homo sapiens GN=IQCD PE=4 SV=1  ali   9  1.................................................................................................................................................................................................................................................................IKDSTKNVLRLLLSNPQAARLLQMQTQGRSAEAQNFIDSLIELRGFLFEKLLTSPMEARDKAQ................................................................................................................................................................................................................................................................................................................................ 63
6 -3.810sp|Q9Y236|OSGI2_HUMAN Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens GN=OSGIN2 PE=2 SV=1  ali   16  1....................................MPLVEETSLLEDSSVTFPVVIIGNGPSGICLSYML--SGYRPYLSSEAIHPNTILNSKL---EEARHLSIVDQDLEYLS----------EGLEGRSSNPVAVLFDT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 91
7 -3.790sp|Q9H1K0|RBNS5_HUMAN Rabenosyn-5 OS=Homo sapiens GN=ZFYVE20 PE=1 SV=2  ali   17  14.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KLYEKLRLCMEKVDQKAPEYIRMAASLNA-------GETTYSLEHASDLRVEVQ... 60
8 -3.760tr|Q3HKR1|Q3HKR1_HUMAN RAP1 short isoform OS=Homo sapiens GN=KCTD7 PE=2 SV=1  ali   14  5................................................................................................................DACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPL....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 61
9 -3.760sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2  ali   14  5................................................................................................................DACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPL....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 61
10 -3.760tr|B4DZM7|B4DZM7_HUMAN Uncharacterized protein OS=Homo sapiens GN=RABGEF1 PE=2 SV=1  ali   14  5................................................................................................................DACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPL....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 61
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;