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Query: [A] KOG3013 Exosomal 3`-5` exoribonuclease complex, subunit Rrp4, from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVTILKPEEFYVSSEADIVNDVSMTEMEDEIMEDEQMGLVDGEDVLEEFDKSIHQNLVTPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAGGVDIILSVNGYVWVSKHNENQHSSVSITRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYESSLVFSNLQDLTVPKNMDQIAMEAMQLast
1 -6.300sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3  ali   14  13..................................................PEGVKQHVKETKLKLEDRSVVPRDVVRHMRST--DSQCGTVIDVNIDCAVKLIGTNCI-MYGDYILGKVYDLKNQIILKLSNGARCSMNTEDGAKLYDVCPHVSDSGLFFDDSYGFYPGQVLIGPAKIFSSVQWLSGVKPVLSTKSKFRVVVEEVQVVELK-----------------------WITK........................................................................................... 196
2 -5.150sp|Q86YV9|HPS6_HUMAN Hermansky-Pudlak syndrome 6 protein OS=Homo sapiens GN=HPS6 PE=1 SV=1  ali   11  6............................................................................................................................................................................................................................................................................................VLQAVGQLVQKEQWDRALDAGLALGPSSPLLRSEIFKLLLAEFAQ 50
3 -4.820sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1  ali   8  1.................................................................................................................................................................................GGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALTWLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVL.............. 146
4 -4.770sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=2 SV=1  ali   17  9.............................................LGEQNGNRNPGGLQIGDLVNIDLDLEIGHGGWTDGMFETLTTTGTVCG--------------IDEDHDI-------------VVQYPSGNRWTFNPAVLTKANIVRSGDAAQGAEGGTSQFQVGDLVQ-----------------------------VCYDLERIKLLQRGHGEWAEAMLPTLGKVGRV............................................................................................... 147
5 -4.290sp|O60393|NOBOX_HUMAN Homeobox protein NOBOX OS=Homo sapiens GN=NOBOX PE=1 SV=4  ali   16  7.LTLPPPEDSLFMFPCGPSGGTSQGYCPGASSGQILMQPPAGNIGTASWSDPCLPELPFPGPFCPQALGHPPGGDGYFPD......................................................................................................................................................................................................................................................... 85
6 -4.010tr|E9PGC6|E9PGC6_HUMAN Uncharacterized protein OS=Homo sapiens GN=PRCC PE=4 SV=1  ali   13  12..............................................................................................................................................................................................................................EFKMAAGSSGAPWMPKPGDDYSYNQFSTYGDANAAGAYYQGLQQHLGHSPLRGIMRFLNS............................................... 71
7 -3.870sp|Q5T7B8|KIF24_HUMAN Kinesin-like protein KIF24 OS=Homo sapiens GN=KIF24 PE=1 SV=2  ali   17  13............................................................STYLKVLEHMLPDDSQYHTKTGILNATAGDSYVQTEISTSLFSPNYLSAILGD-IIQRISHVSG............................................................................................................................................................................................................. 79
8 -3.820sp|Q9HBJ8|TMM27_HUMAN Collectrin OS=Homo sapiens GN=TMEM27 PE=1 SV=1  ali   10  13...........................................................................................................................................................................................................................VRLSIRTALGDKAYAW-----DTNEEYLFKAMVAFSMRKVPNREATEISHVLLCNVTQRVSFWFVVTDQSAIRMNKNRINNAFDQTLEFLKIPSTLAPPMDPSV...... 126
9 -3.800sp|Q8N594|MPND_HUMAN MPN domain-containing protein OS=Homo sapiens GN=MPND PE=1 SV=1  ali   15  1.....................................................KDALLEPGAVLSIYYLGKKFLGDLQPDGRIMWQETGQTFNSPSAWATHCKKL................................................................................................................................................................................................................................ 53
10 -3.790sp|Q6P1W5|CA094_HUMAN Uncharacterized protein C1orf94 OS=Homo sapiens GN=C1orf94 PE=1 SV=1  ali   10  19.....PSGQPRLRNKVEVDGPELKFNAPVTVADKNNPKYTGNVFTPHFPTAMTSATLNQPLWL-YPPPPVFTNHSTFLQYQGLYPQQAARMPYQQA---LHPQLGCYSQQV.......................................................................................................................................................................................................................... 123
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.