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Query: [E] COG0786 Na+/glutamate symporter, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNQIISIGALESFLIAISVLFLGHFINAKLPILTKFNIPEPIVGGLIVACVITALHFHGIDMEFSLPLQNVFMLMFFSTVGLAANYTQLIKGGAKVFLFLAVASVFIIIQNGVGVSLAAGLGLDPLLGLIAGSITLSGGHGTGAAWANTFAENYGLANTLEIAMASATFGLIIGGIIGSPVAQKLVDKHGIESEYGRGTQTHSRFPELVTYNEYEEDKVTAKKVIEILFILLICVTGAKYLEAWVKTFEIRWLMIPDFVYALFIGVFITNLLEVTKLRKVDAETVDILGTVSLSLFLAMALMSLKLWNIFDLALPFLVILAIQSVVLGVFCYFVTFKVMGANYDAAVISAGHCGFGLGATPTAVMNMGSVVKRFGPSPQAFMVVPIVGAFFIDIVNLIILQGYISFLGLast
1 -13.2005a1s_A mol:protein length:448 CITRATE-SODIUM SYMPORTER  ali model follow..  15  43FYNAIPTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGAS---LFGIVIGLCFGIPVDRIMMLYVLPIMGGNGAGAVLSEIYHSVTGRSREEYYSIAILTIANIFAIIFAALLDMVGKKYTWLSGEGE-----LVRKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPSI-GGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGD-LEVLSA-CNRMNLISYAQISSRLGGGIVLVIASIVFSMMVLE... 448
2 -12.6005x9r_A mol:protein length:438 Citrate-sodium symporter  ali model follow..  14  33FYNALPTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAKSNFLNLFIAVLITGAILSVNRRLLLKSLLGYIPTILMGIVGAS---IFGIAIGLVFGIPVDRIMMLYVLPIMGGNGAGAVLSEIYHSVTGRSREEYYSIAILTIANIFAIVFAAVLDIIGKKHTWLSGEGE-----LVRKASFKVEEDEKTGQITHRETAVGLVLSTTCFLLAYVVAKKILPSIG-GVAIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFKQLLWVLMVGVGVCYTDLQEIINAITFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAGLCMANRGGSGD-LEVLSA-CNRMNLISYAQISSRLGGGIVLVIASIVF......... 432
3 -7.4003bk3_A mol:protein length:114 Bone morphogenetic protein 2  ali model follow..  21  20............................................................................................................................................................................................................................................................................................................................................YVDFSDVGPGYHA-MYCHGECPFPLADNSTNHAIVQTLVNSVNSKIPKACCVPTISMLMLDENEKVVLKNYQDMV. 107
4 -7.3702h64_A mol:protein length:114 Bone morphogenetic protein 2  ali model follow..  20  20............................................................................................................................................................................................................................................................................................................................................YVDFSDVGPGYHA-FYCHGECPFPLADNSTNHAIVQTLVNSVNSKIPKACCVPTISMLYLDENEKVVKKDYQDMV. 107
5 -7.0601es7_A mol:protein length:116 BONE MORPHOGENETIC PROTEIN-2  ali model follow..  21  22............................................................................................................................................................................................................................................................................................................................................YVDFSDVGPGYHA-FYCHGECPFPLADNSTNHAIVQTLVNSVNSKIPKACCVPTISMLYLDENEKVVLKNYQDMV. 109
6 -7.0204mid_A mol:protein length:115 AB204 Activin A/BMP2 chimera  ali model follow..  21  21............................................................................................................................................................................................................................................................................................................................................YVDFSDVGSGYHA-NYCDGECPFPLADNSTNHAIVQTLVNSVNSKIPKACCVPTMSMLYYDDGQNIIKKDIQNMI. 108
7 -6.4001bmp_A mol:protein length:139 BONE MORPHOGENETIC PROTEIN-7  ali model follow..  20  37.....................................................................................................................................................................................................................................................................................................................................ACKKHELYVSFRDLGEGYAA-YYCEGECAFPLNSNATNHAIVQTLVHFINPETVP-CCAPTISVLYFDDSSNVILKKYRNMV. 132
8 -6.3702r52_A mol:protein length:143 Bone morphogenetic protein 6  ali model follow..  21  41.....................................................................................................................................................................................................................................................................................................................................ACRKHELYVSFQDLGKGYAA-NYCDGECSFPLNANATNHAIVQTLVHLMNPEYVP-CCAPTISVLYFDDNSNVILKKYRNMV. 136
9 -6.3404cz8_A mol:protein length:422 NA+/H+ ANTIPORTER, PUTATIVE  ali model follow..  12  1......MIELSLAEALFLILFTGVISML---ISRRTGISYVILTGLVIGPLLKLIPRDLAHEIFDFVRVFGLVIILFTE-GHNLSWRLLKKNMPTIVTLDTIGLILTAL--IAGFIFKVVFNSSFLLGFLFGAIPLFRQYRVKQDIETVIVTESIFNDPLGIVLTLIAISISLGIFLG--LGYKFIKRTGIFDFPEIE------------------------------AFSLSLAFLGFFIGERLDAS---------YLVATVTGIVLGNLQRAIEKEVHFNDTLAALATIFIFVLLGAEMNLEVIWSNLGKGLLVALGVMILARPLATLPLLKWWNFREYLFIALEGPRGVVPSALASLPLSLALKYKSPLLTVHWGEIIMATVVITVLTSVIVETLWIPILKDKLD 420
10 -6.1903o7p_A mol:protein length:438 L-fucose-proton symporter  ali model follow..  11  36.........................................FLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPAGILMKKLSYKAGIITGLFL------YALGAALFWPAAEIMNYTLFLVGLFIIAGLGCLETAANPFVTVLGPESSGHLNLAQTFASF--GAIIAVVFGQSLILSNKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-------LAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYIFSLGIKNLGQDTKSSFIVMTIIG---GGIVTPV--MGFVSDAAGNIPTAELIPALCFAVIF................ 426
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;