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Query: [E] COG1280 Putative threonine efflux protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTALLGLFIPTFFFVSITPGMNMTLALTLGMSVGYRRTLWMMVGELLGVALVAVSAVVGIAAVMLRYPDIFTLFKIVGASYLVYLGVQMWRSRGKLAINIEQENTYQGSDWGLLVQGFVTAIANPKGWAFMVSLLPPFIDQSLSLAPQLTVLVAIILLSEFISMSLYATGGKGLKRLLSQAHHVRLLNRIAGSLMAGVGIWLYFSLast
1 -9.9405vkv_A mol:protein length:232 Cytochrome c-type biogenesis protein CcdA  ali model follow..  14  1MSLSLTAAFL-AGVLSFLSP---LVPTYLFYLGGARGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEHRQTLARVGGVVLVLFGLYML-GLRPRWGVSLRYEGETSRPLGAFLLGATLALGTPCIGPILGAILTLTAVGGGVGFLLAYILGLAVPFF------VVALFADRIKGWLRRGRISHYVEVLAGVVLVLVGVLLFTG 201
2 -8.2905t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  12  5.....................PGKVVIVTSGRYAGKKAVIVQNTDSKSKERPYGHSLIAGMKKYIQRRSRVGVFLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNRWFFQRL....................................................................... 130
3 -7.9306bbj_A mol:protein length:868 Transient receptor potential cation channel, subfamily V, member 4  ali model follow..  9  551....IYSVLVIITAVLYLVGIESYLAVMVFALVLGWMNALYFTRGLLTGTYSIMLQKILFKDLFRFLLVYLLFMIGYASALVSLLNPCTSQESCIETSSNCTVPEYPSCRDSSTFSKFLLD--------LFKLTILEMINSAKYPAVFIILLVTYIILTFVLLLNMLIALMGETVGQVSKESKQIWKLQWAT--TILDIERSF... 744
4 -7.7403jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  10  7.....................PGKVVIVTAGRYAGHKAVIVQNSDIATKERPYGRALLAGIKKYIARRSQVGVFLRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHVFQARYNAGSSMWFFQRL....................................................................... 132
5 -7.7103iyz_A mol:protein length:340 Aquaporin-4  ali model follow..  12  48...AVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGVAMVCTRKSVFYITAQCLGAI----IGAGILYLVTPPSVVGGLGVTTVHGNLTAG-HGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIFSVAIGHLFAINYTGASMFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF. 263
6 -7.1505ngo_A mol:protein length:194 Inactive poly [ADP-ribose] polymerase RCD1  ali model follow..  17  74...........................LSAVMMQGLGVGGAFIRKSIYGVGIHLTAADC------PYFSARYCDVDENGVRYMVLCRVIM-------NMELLRGDKAQFFSGGEEYDNGVDDIESPKNYIVWNIIFPEFV.................................................................. 179
7 -6.9105hi9_A mol:protein length:770 Transient Receptor Potential Cation Channel Subfamily V Member 2  ali model follow..  13  474......ILFLLQALLTVLS----QVLRFMETEWYLPLLVLSLVLGWLNLLYYTRGFQHTGIYSVMIQKVILRDLLRFLLVYLVFLFGFAV-ARSPKAPEDNNSTVTEQPTVGQEEEPAPYRSILDASLELFKFTILAFQEQLRFRGVVLLLLLAYVLLTYVLLLNMLIALMSETVNHVADNSWSIWKLQKAISVLEM......... 671
8 -6.9006c8f_A mol:protein length:675 Transient receptor potential cation channel, subfamily V, member 4  ali model follow..  9  420....IYSVLVIITAVLYLVGIESYLAVMVFALVLGWMNALYFTRGLLTGTYSIMLQKILFKDLFRFLLVYLLFMIGYASALVSLLNPCTSQESCIETSSQCTVPEYPSCRDSSTFSKFLLD--------LFKLTILEMINSAKYPAVFIILLVTYIILTFVLLLNMLIALMGETVGQVSKESKQIWKLQWATTILDI......... 609
9 -6.6106mho_B mol:protein length:826 Transient receptor potential cation channel subfamily V member 3  ali model follow..  14  525......FVFFIQAVLVILS----VFLYLFAYKEYLACLVLAMALGWANMLYYTRGFQSMGMYSVMIQKVILHDVLKFLFVYIVFLLG---FGVALASLIEKCPKDNKDCSSYGSFSDAVLE--------LFKLTILNIQQNSKYPILFLFLLITYVILTFVLLLNMLIALMGETVENVSKESERIWRLQRARTILEFEKML..... 708
10 -6.5202b5f_A mol:protein length:303 aquaporin  ali model follow..  12  40...AAIAEFIATLLFLYITVATVIGHSKETVVCGSVG-GIAWAFGGMIFVLVYCTAGISGFGLFLARKALVYMIAQCLGAI----CGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSDDQWIFWVGPFIGAAVAAAYHQYVLR 265
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.