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Query: [M] COG1970 Large-conductance mechanosensitive channel, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPTKEEVLLTEIRDLLKEQNNRSLast
1 -53.9002oar_A mol:protein length:174 Large-conductance mechanosensitive channel  ali model follow..  33  13.HMLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQSDVGILRIGIGG----GQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGEVEQPGDT--QVVLLTEIRDLLAQTNGDS 141
2 -52.5006ctd_A mol:protein length:121 Large-conductance mechanosensitive channel  ali model follow..  29  14.HMLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQSDVGILRIGIG----GGQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKG............................. 115
3 -51.2003hzq_A mol:protein length:114 Large-conductance mechanosensitive channel  ali model follow..  49  14.HMLKEFKEFALKGNVLDLAIAVVMGAAFNKIICSLVENIIMPLIGKIFGSVDFAKEWSFW----------GIKYGLFIQSVIDFIIIAFALFIFVKIANTLMKKE.............................. 108
4 -48.7004y7j_A mol:protein length:277 Large conductance mechanosensitive channel protein,Riboflavin synthase  ali model follow..  29  15MGLFSEFKEFLYEYKVIPLAIAFIMGIASTALIKSFVDNIIMPIITPFVPGGGWETATVEL-------GPIVISWGAFLGELVNFIIIAFAVFIIAKKVLQEEKVEKK............................ 115
5 -11.6004lku_A mol:protein length:29 Large-conductance mechanosensitive channel  ali model follow..  100  1...........................................................................................................EPAAAPAPTKEEVLLTEIRDLLKEQNNRS 29
6 -7.9401u3m_A mol:protein length:117 prion-like protein  ali model follow..  12  1.............GSVVGGLGGYAMGRVMSGMNYHFDRP---------------ENSARYPNRVYYRDYSSPVPQDVFVADCFN---ITVTEYSIGPAAKKNTSEAVAAANQTEVEMENKVVTKVIREMCVQQ... 109
7 -7.5904pxk_A mol:protein length:258 Bacteriorhodopsin  ali model follow..  13  81......YTDWLFTTPLLLYNLGLLAGADRNTIYSLVSLDVLMIGTGVVA----------TLSAGSGVLSAGAERLVWWGISTAFLLVLLYFLFSSLSGRVANLPSDTRSTFKTLGIGIETAGFMVIDLVAK..... 220
8 -7.4602yfv_C mol:protein length:63 SCM3  ali model follow..  33  40.QIIQKYESIDNQGDVIDLQTGEVI............................................................................................................... 63
9 -7.3206aye_A mol:protein length:558 Mucolipin-3  ali model follow..  13  414...LPNVIRFCCCAAMIYLGYCFCGWIVLGPYHDKFLNMVSECLFSLINGDDMFATFAKMQQKSYLVWLFSRIYLYSFI-SLFIYMILSLFIALITDTYETIKQYQQDGFPE----------TELRTFISECKD.. 535
10 -7.3102f93_A mol:protein length:248 Sensory rhodopsin II  ali model follow..  10  72......YIDWILTTPLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPLGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVILWAIYPFIWLLG-------PPGVALLTPTVDVALIVYLDLVTK..... 204
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.