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Query: [S] COG2149 Predicted membrane protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MKISRLGEAPDYRFSLANERTFLAWIRTSLGFLAAGVGLDQLAPDFATPVIRELLALLLCLFAGGLAIYGYLRWLRNEKAMRLKEDLPYTHSLLIISVILMIVAVIVMGLVLYAGLast
1 -9.0605lnk_r mol:protein length:127 Mitochondrial complex I, B17 subunit  ali model follow..  15  1.....SGYTPDEKLRLQQLREL-RWLKDQELFWNKFLQDGALWKNVIYKTYRHSIFAFTHVLIPVWIIHYYLKYHVTT-VEKKPRIFPGD......................... 107
2 -8.3506g2j_i mol:protein length:128 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6  ali model follow..  12  1....MSGYTPDEKLRLQQLREL-RWLKDQELFWDNFLRDGAVWKNMVFKAYRSSLFAVSHVLIPMWFVHYYVKYHMAT-VSSKPRIFPGD......................... 108
3 -7.7301wjo_A mol:protein length:124 T-plastin  ali model follow..  12  3............SGSSGNDDIIVNWVNRTLSEAGKSTSIQSFK........................................................................ 33
4 -7.4702d85_A mol:protein length:124 L-plastin  ali model follow..  11  7................GNDDIIVNWVNETLREAEKSSSISSF......................................................................... 32
5 -7.3204o6y_A mol:protein length:230 Probable transmembrane ascorbate ferrireductase 2  ali model follow..  10  99VWAALKFHIDKGIENFYSLHSWLGLACLFLFAFQWAAGFVTYWYPGGSRNSRASLGISIYALALVTATTGILEKVTFLQVNQVITRYSTEAMLVNTMGVLILILGGFVILGVVT. 219
6 -7.3105xtc_b mol:protein length:128 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6  ali model follow..  15  1....MTGYTPDEKLRLQQLREL-RWLKDQELSPREPVLPPQKMGPMEKGVYKKSIFVFTHVLVPVWIIHYYMKYHVSE-VEKKSRIFPGD......................... 108
7 -7.2605gup_b mol:protein length:128 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6  ali model follow..  15  1....MSGYTPDEKLRLQQLREL-RWLKDQELSPREPVLPPRRVWPMEQKTYRHSIFAVTHVLIPVWIIHYYLKYHVTAKPYTKPRIFPGD......................... 108
8 -7.1805kk2_E mol:protein length:323 Voltage-dependent calcium channel gamma-2 subunit  ali model follow..  16  88.....DYEADTAEYFLRAVRASSIFPILSVILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYISANAGDPSKSDSKKSFYFGALSFIIAEMVGVLAVHMFID. 203
9 -7.0605vhw_A mol:protein length:1057 Glutamate receptor 2,Germ cell-specific gene 1-like protein  ali model follow..  15  923.....GGPGEKCRSFIASEKGVL-WLSVVILLLVVGFSLMCLELLHSSSVI-NAFAAVFTVLSGLLGMVAHMMYFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTT. 1046
10 -7.0505mzj_A mol:protein length:434 Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a  ali model follow..  17  48...................QNVTNYFVVSLAAILVGVLAIPFAITISTGLFIACFVLVLAQSSIFLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPML... 151
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.