current user: public
If you have questions about the server, please let us know.

Query: [S] COG2311 Predicted membrane protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .
# Score Template Links and tools%idFirst MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPRDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGPAISKTSRLast
1 -6.1903j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  10  2........................................................................................................................................................................................................................................................................................................VFRRFVEVGRVAYVSFGPHAAIVDVIDQNRALVDAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAK 103
2 -5.8602m13_A mol:protein length:65 Cytoplasmic polyadenylation element-binding protein 1  ali model follow..  11  1................................................................................................................................................................................................................................................................................................................GPVQIDPYLEDSLC-----------HICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLR---------HHSPLMRNQKN 61
3 -5.8303kp9_A mol:protein length:291 VKORC1/thioredoxin domain protein  ali model follow..  12  22........ILAILAGLGSLLTAYLTYT--KLTEQPAAFCTGDGGSDL--------VLSSRWAEFLGIAVGLLGFLGVPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTT-------AIILVAGLGLVTV...................................................................................................................................................................................................................................................... 148
4 -5.7505lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  8  2........................................................................................................................................................................................................................................................................................................VFRRFVEVGRVAYVSF---VAIVDVIDQNRALVDAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAK 103
5 -5.6305uq3_C mol:protein length:201 Cyclin-dependent kinase inhibitor 1B  ali model follow..  14  1.....................................................................................................................................................................................................................................................................................................GEFMSNVRVSNGSPSLERMDARQAEHPKPSACRNLFGPVDHEEL--LEKHCRDMEEASQRKW--NFDF-PLEYEWQEVEKGSLPEFYYRPPR 96
6 -5.6106bbj_A mol:protein length:868 Transient receptor potential cation channel, subfamily V, member 4  ali model follow..  13  602LQKILFKDLFRFLLVYLLFMIGYSLLNPCTSQESCIETSSNCTVPEYPSCRDSSTFSK-FLLDLFKLTIGMGDLEMINSAKYPAVFIILLVTYIILTFVLLL---NMLI--ALMGETVGQVSKESKQIWKLQWATTIL....................................................................................................................................................................................................................................................... 738
7 -5.5605hi9_A mol:protein length:770 Transient Receptor Potential Cation Channel Subfamily V Member 2  ali model follow..  13  529IQKVILRDLLRFLLVYLVFLFGFAVALVSLSREARSPKAPEDNNSTVTEQPTVG--ILDASLELFKFTIGMGELAFQEQLRFRGVVLLLLLAYVLLTYVLLL---NMLI--ALMSETVNHVADNSWSIWKLQKAISVLE...................................................................................................................................................................................................................................................... 670
8 -5.5504d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  8  2........................................................................................................................................................................................................................................................................................................VFRRFVEVGRVAYVSF--LVAIVDVIDQNRALVDAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAK 103
9 -5.4905an8_A mol:protein length:613 TRPV2  ali model follow..  19  452IQKVILRDLLRFLLVYLVFLFG---FAVALVSLSREAQEDEAPPYRS---------ILDASLELFKFTIGMGELAFQEQLRFRGVVLLLLLAYVLLTYVLLL---NMLI--ALMSETVNSVATDSWSIWKLQKAISVL....................................................................................................................................................................................................................................................... 572
10 -5.4102l2o_A mol:protein length:89 UPF0727 protein C6orf115  ali model follow..  16  23.........................................................DGKLSVKFGVLFRDDKSANLFE-------ALVGTLKAAKRRKIVTYPGELLLQGVHDDVDIILLQDLE.................................................................................................................................................................................................................................................................... 83
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.