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Query: [S] COG2510 Predicted membrane protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MMMASWQFWALMSAVFAALTAIFAKVGIQGINSDFATLVRTFVIIGALCLFLTVTGQWQKPGEISARSWLFLVLSGLATGASWLAYFRALQIGDASRVAPIDKLSVVLVALFGAAFLGERMSTINWIGILLIGCGVVLVALRVLast
1 -40.9005i20_A mol:protein length:298 Uncharacterized protein  ali model follow..  16  1MSRSSATLIGFTAILLWSTLALATS-STGAVPPFLLTALTFTIGGAVGIAAGLARGVG---LSVLRQPWPVWVHGIGGLFGYHFFYFSALKLAPPAEAGLVAYLWPLLIVLFSAFLPGERLRPAHVAGALMGLAGTVVLLGA. 138
2 -23.3005oge_A mol:protein length:337 GDP-mannose transporter 1  ali model follow..  15  184.....GYFWMFTNCITSALFVLIMRKRIKNFKDFDTMFYNNVLALPILLLFSFCVEDWSSVNLFSNDSLTAMIISGVASVGISYCSGWCVRVTSSTTYSMVGALNKLPIALSGLIFFDAPRNFLSILSIFIGFLSGIIYA... 323
3 -23.1005y78_A mol:protein length:329 Putative hexose phosphate translocator  ali model follow..  12  163.....GFITAMISNVAFVTRNITSKFTMVDLIAQNTYALITIISFFMELPFALLMEGFPPLVSAKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTPVTRLNFIGSTIAIIGTMLYSL.. 309
4 -19.4002i68_A mol:protein length:137 Protein emrE  ali model follow..  26  34........................................................................VGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL.. 103
5 -6.8105wie_B mol:protein length:532 Potassium voltage-gated channel subfamily A member 2,Potassium voltage-gated channel subfamily A member 2  ali model follow..  16  297.......IVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAVVSMTTVGYGDMVPTTKIVGSLCAIAGVLTIALPV 439
6 -6.6002r9r_B mol:protein length:514 Paddle chimera voltage gated potassium channel Kv1.2-Kv2.1  ali model follow..  13  266.......IIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTKIVGSLCAIAGVLTIALPV 411
7 -6.5806ebk_B mol:protein length:513 Potassium voltage-gated channel subfamily A member 2,Potassium voltage-gated channel subfamily B member 2 chimera  ali model follow..  16  270.......IVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAVVSMTTVGYGDMVPTTKIVGSLCAIAGVLTIALPV 412
8 -6.5605oql_B mol:protein length:907 Utp2  ali model follow..  7  523LGNFSQVLIHHIAYLGDRFQPHWFPTLEQLSRHVHSLAKTFPIEVAKAYRMRIQEMEEHRPLAPTVGDLVILTAIGTTFPTSMLAIARYLGQKVPAALSDFAVGIYLSILALQYQDFAKRYVPE----MMNFLLNTLCALAPE 671
9 -6.5505oql_C mol:protein length:648 Utp3  ali model follow..  13  212.................DMGPEERYNLLQARYPEFDYLVEEFRELRPLL-----ETLQKEAEGKPAKSLPVVKAWVLGCYVAALASYFAILTSPTRDGDESKGIMEVMQTLMECREAWLKVK..................... 319
10 -6.2605o9z_I mol:protein length:312 Pre-mRNA-splicing factor 38A  ali model follow..  12  1..........MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL............. 120
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;