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Query: [P] COG3067 Na+/H+ antiporter, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEISWGRAMWRNFLGQSPDWYKLALLVFLIVNPFIFLANPFIAGWLLVAEFIFTLAMALKCYPLLPGGLLAIEAVIIGMTSAAHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRLLLSIRSKMVLSLAFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVEKMRWFGYGETLPEKVRDVLQQFDDQSRKKRTRQDKIKLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATALTGVTDEHAIGKAFTESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQASEHAQLTLFYLFNGLLSSISDNVFVGTIYINEAKAAMENGAISLKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLIGLLCVEFTLAPATEWMTQAGWLATLSLast
1 -59.4004f35_D mol:protein length:449 Transporter, NadC family  ali model follow..  14  36.............................................ISMLAFIAVLWLTEALHVTVTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAV-----------------------------FMLFGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTL----NGMFELDRAPVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVVH----KEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHGIFVVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGMSPV---LLSVLIAVAAS-CAFMLPVATPPNAIVFASGH-----IKQSEMMRVGLYLNIACIGLLTAIAMLFWQ................ 449
2 -58.3005uld_A mol:protein length:445 Transporter, NadC family  ali model follow..  14  32.............................................ISMLAFIAVLWLTEALHVTVTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAV-----------------------------FMLFGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKVFVLLGVAYSASIGGIATLVGTGPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTL----NGMFELDRAPVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVVH----KEIQKTADWGILLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHGIFVVILVVATFVVFLTEFTSNVATTTLLIPVFATVAEAFGMSPV---LLSVLIAVAAS-CAFMLPVATPPNAIVFASGH-----IKQSEMMRVGLYLNIACIGLLTAIAMLFWQ................ 445
3 -11.6004r0c_A mol:protein length:492 AbgT putative transporter family  ali model follow..  11  14.............LGNRPH----PTLLFVWFCLLLLPLTAVLGDVTATHPLTDETITAHSLLDAD-----GLRYLFTTLVG-----NFTGFAPLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSSGGALVFTVAF---------------------------------AGVLSSLTVDAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSANLLVGPVDATLAGLS-VAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPNFIHGLVVIVALIAGICGAVYGRVSGQFRNSGEVTMASMAGYLVLMFFAAQFVAW--FNYSQLGLLLAVKGAAWLGAPKVVLLLLFVVLTALINLMIGSAS-WSILAPVFIPMLMLLGISP---EASQAAYRVGDSSTNIITPLMPY--VLVLGFARRYQPETGIGTLIALMLPYSLTLLLGWSVLLGVWIGF............... 486
4 -9.8804r1i_A mol:protein length:522 Aminobenzoyl-glutamate transporter  ali model follow..  11  19.............LGNMPH----PVTLFIIFIVLLLIASAVGA--------YFGLSVPDPRPVGAKGRADDGLIHVVSLLDADGLIKILGFAPLGTVLVSLLGVGIAEKSGLISALMRLLLTKSPRKLTTFMVV-----------------------------FTGILSNTASELGYVVLIPLSAVIFHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDQAAQIIHPDYVVGPEANWFFMAASTFVIALIGYFVTEKIVEPQLGPYQSDLSQEEKDIRHSNEITPLEYKGLIWAGVVFIALSALLAWLKSIVVFIFLLFALPGIVYGRITRSLRGERAESMSTLGLYLVIIFFAAQFVAF--FNWTNIGQYIAVKGAVFLKEAGSVLFIGFILICAFINLMIGS---WAVTAPIFVPMLMLAGYAP---EVIQAAYRIGDSVTNIITPMMSY--GLIMATVMKYKKDAGVGTLISMMLPYSAFFLIAWIALFCIWVFVL.............. 507
5 -6.7202l92_A mol:protein length:50 Histone family protein nucleoid-structuring protein H-NS  ali model follow..  30  20..............GRQPAWLGNDPAAFLIQPDL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 39
6 -6.4905mqf_T mol:protein length:908 Pre-mRNA-splicing factor CWC22 homolog  ali model follow..  6  166INGLINKVNISNISIII-----QELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECG---------LKLTQVSPRGINAIFERLRNILHESEIDKRVQYMI--EVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMD-PNFMENEEKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQRTYFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECI-KLSEETTTSSSRIFVKIFFQELCEYMGKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLG.................................... 637
7 -6.3505oql_B mol:protein length:907 Utp2  ali model follow..  7  568..AKAYRMRIQEMEEHRPLAPTVGDLVILTAIGTTFPTSDH----VCTPAMLAIARYLGQKVPAALSDFAVGIYLSILALQYQDFAKRYVPEMMNFLLNTLCALAPERAKSKLGNFPVHEPPAGIRIKDATNTPIRQLNCGDCLRKDELSPAETSSLQIAILATAILKSAADTWHKLPAFIESFQPA-LSVAQHLLTKPNASHLPSSLTSKLNDLASHLSRLLQLSRLSRRPLE----LHHHRPLAIKTYIPKFEDDFDPDKHYDPNRERAELAKLKAEHKRERKGALRE----------------------LRKDAQFIRREQLRIKKEKDEAYEKKFKRIIAEIQNE..................................................................................................................................................................... 888
8 -6.2805fl8_r mol:protein length:767 Protein SDA1  ali model follow..  9  9.MLPTNIILLQNLVKRDPESYQESLRDIFMLNGLAGGDSAAATNGLDVGNGSSTMAGTNGTTMSTSTSQLIELVGFVSQVCSPRETANFPSELKQLLLEHHKSLPFELKEKILSCLTMLRNKDVITAEELIQSLFPLLVASSHGNSLGVNSHAKELRKIIYTNLISLLKSCNTNGKNQKLNKSTQAVCFNLLDQPDSQGI--LTRELWRRGIWDDSRTV----EIMTQAALHQD----------VKIVMSGVMFFLDADREREENFEENSEDEDGFDLDALRHKMQVNKKTGRRGKKLENAIKTVKKKKKNGPGAPQGYLNFSAIHLLFAEKLFKEHLSGKTKNKFDMEQKISLMQLLSRLIGTHKLIVLGIYTFFLKYLTPKQRDVTRIMSACAQACHDLVPPEV-----INVMVRKIADEFVSDGVANEVAAAGINTIREICSRAPLA--LQDLVEYKGSKAKGVNMAAKSLIAL..................................... 488
9 -5.7502lev_A mol:protein length:57 Ler  ali model follow..  36  24..............GRQPRWLKEALLNGMKKEDFLV.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 45
10 -5.3906az3_n mol:protein length:33 ribosomal protein eL41  ali model follow..  17  3.........VSRPRGMRPKWHKKRIKRLKLRR.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 25
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.