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Query: [O] COG3175 Cytochrome oxidase assembly factor, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGTLast
1 -84.1001so9_A mol:protein length:164 Cytochrome C oxidase assembly protein ctaG  ali model follow..  34  1..........................................MVPLYDMFCRVTGYNGTTQRVEQASDLIL---DEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPIKTLTLSYTFYPREPSKPVAQVKAKAEN 162
2 -8.1305ty4_B mol:protein length:97 mmTGF-b2-7m  ali model follow..  12  4.............................................................................RPLYIDFRKDLGWKWIHEPKGYNANFCAGA---CPYLWSSDTQHSRVLSLYNTINPEASAS--------CCVSQDLEP-----LTIVYYVGRKKVEQLSNMIVK..................... 93
3 -8.1204be5_A mol:protein length:262 RBMA  ali model follow..  9  114..............................................YTVSLQVVAENGKVFKANQEFVKGVDLNSLPELNGLTIDIKNQ-------FGINSVESTGGFVPFTVDLNNGREGEANVEFWMTAVGPDGLII---------EKWVIASGDTYSKVRGINFDKSYPAGEYTINASMTVVK................ 255
4 -8.0501fwa_B mol:protein length:106 UREASE  ali model follow..  11  2.........................................................................................IPGEYHVKPGQIALNTGRA-TCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYTAVRFEPGQKREVELVAFAGHRAVFGFRGEV....................... 97
5 -8.0301tfg_A mol:protein length:112 TRANSFORMING GROWTH FACTOR, BETA 2  ali model follow..  12  18.............................................................................RPLYIDFKRDLGWKWIHEPKGYNANFCAGA---CPYLWSSDTQHSRVLSLYNTINPEASAS--------CCVSQDLEP-----LTILYYIGKTKIEQLSNMIVK..................... 107
6 -8.0101ie7_B mol:protein length:126 UREASE BETA SUBUNIT  ali model follow..  13  3....................................................................................NNNYIVPGEYRVAEGEIEINAGRE-KTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRTAARFEPGEEMEVELTELGGNREVFGISDLT....................... 103
7 -8.0001ktz_A mol:protein length:112 TRANSFORMING GROWTH FACTOR BETA 3  ali model follow..  10  1............................................................ALDTNYCFRNLEENCCVRPLYIDFRQDLGWKWVHEPKGYYANFCSGP---CPYLRSADTTHSTVLGLYNTLNPEASAS--------CCVPQDLEP-----LTILYYVGRTKVEQLSNMVVK..................... 107
8 -7.9604eae_A mol:protein length:190 Lmo1068 protein  ali model follow..  10  23........................................................GGDVTTTYLSSSKSFQKDFEALTLFIN-EVSASNPESYLANKN------GYVITLDISIKNNSKKDKMYKADQISLLGASKSVGGSLDNFIPSGFNFTAGKTARGLLTFTMDEATYNDLAKD........................ 159
9 -7.8603jxs_A mol:protein length:174 Xylanase  ali model follow..  6  34........................................................SSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGNNPYDIHATALPVNVRPGVTYTYTIWARAEQDGAVVSFTVGNQSHDDYGRL--------FTFEFTVSDQETVIRAPIHFGFAANVGIDGLAIV..................... 165
10 -7.7801waq_A mol:protein length:117 GROWTH/DIFFERENTIATION FACTOR 5  ali model follow..  10  1...........................................................MKRQGKRPSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPESTPP--------CCVPTRLSP-----ISILFIDSANVYKQYEDMVVE..................... 112
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.