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Query: [S] COG3216 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGGLast
1 -8.4705kom_A mol:protein length:147 Putative fluoride ion transporter CrcB  ali model follow..  11  8.................................................VIIGGSVGCTLRWLLSTKFNSLFPNLPPGTLVVNLIIGTALAYFLRQPHLDPFWKLMITTG--LCGGLSTFSTISVEVFALLQAGNYIWALT-----SVLVHVIGSLIMTALGFFIITILFATRGKAASLVPRGS......................... 139
2 -8.4105iws_A mol:protein length:470 Protein-N(Pi)-phosphohistidine-sugar phosphotransferase (Enzyme II of the phosphotransferase system) (PTS system glucose-specific IIBC component)  ali model follow..  318....................................................GIAFAMFRNVDKEKRAKYKPMFLSAAL-------AVFLTGVTEPIEFMFMFIA-YVVYAITTGLAFALADLINLRVHAFGFIELITRTPMMVNAGLTRDVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGNYIDNEDEASEGTGNVQDGSLATK... 470
3 -8.3405kbn_A mol:protein length:147 Putative fluoride ion transporter CrcB  ali model follow..  11  8.................................................VIIGGSVGCTLRWLLSTKFNSLFPNLPPGTLVVNLIIGTALAYFLRQPHLDPFWKLMITTG--LCGGLSTISTFSVEVFALLQAGNYIWALT-----SVLVHVIGSLIMTALGFFIITILFATRGKAASLVPRGS......................... 139
4 -8.2803wo7_A mol:protein length:254 Membrane protein insertase YidC 2  ali model follow..  10  54LTLKQQKSMRAMQVIRPEMEAI---QKKYKEKASKDPKVQQEMQKELLGLYQKHGVNPMAGCLPLFIQLPILMAFYFAIMRTEEIRYHTFLWLGQPDYILPFVAGITTYFQFKMTQQMQKTNPSDSDNPMANMMQMQMKVMLYVMPVMIIIAGLSLPSALSLYWVIGNIFMIIQTYFIVVKAPPLEVLESSGENLYFQ........... 254
5 -7.9706cfw_G mol:protein length:117 Monovalent cation/H+ antiporter subunit C  ali model follow..  13.....................................................ILLGIY-----------------ALLYKRNLIKLVLALNLIDSGIHLLLISEGYRMEN-----------GIPPTAPIYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAIALTVNAYRHYGTLDVTKLRRLR........................ 116
6 -7.9405y83_A mol:protein length:451 Membrane protein insertase YidC  ali model follow..  270.QTKSLINMRKLQPQIEAIKKKYKDPTKQQEALLKLYRE---------------GVNPASGCLMLLIQLPIFMLLWSVIRYYVEEFAYSGSFL-KDLSAGNNWLFLVITIVASY------------YTTLLTSQDARTAWQGIIMSVIFPFLFVGLPSGLFLYYATNTLIQLAVTYYTYKRYKIKGLTTRELLGLPKKA.......... 445
7 -7.8305a40_A mol:protein length:128 PUTATIVE FLUORIDE ION TRANSPORTER CRCB  ali model follow..  15  12.................................................IGIGATLGAWLRWWPWGTLTANLV--------GGYLIGVMVALIASHPEWPAWIRLAAVTG--FLGGLTTFSTFSAETVDMLCRGVYATAAA-----YAGASLAGSLAMTGLGLATVRLLLR...................................... 128
8 -7.8203wvf_A mol:protein length:551 Membrane protein insertase YidC  ali model follow..  13  376.QYTSMAKMRMLQPKIQAMRERLGDDKQ-------------RISQEMMALYKAEKVNPLGGCFPLLIQMIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGTMFFIQKMSPTTVTDPMQQKIM----------TFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLLESSGENLYFQ........... 551
9 -7.7905vkv_A mol:protein length:232 Cytochrome c-type biogenesis protein CcdA  ali model follow..  11  4................................................SLTAAFLAGVLSFLSPCVLPLVPTYLFYLGGARGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEHRQTLARVGGVVLVLFGLYMLGLRPRWGVS--PLGAFLLGATLALG................................................ 123
10 -7.7806cfw_C mol:protein length:124 Monovalent cation/H+ antiporter subunit G  ali model follow..  14  32.......................................YTRLHGATKCTTFGTIFAALAVITHAIVKLQATGNPKYLQMAIHSFVAMLALLLTNPVGAHAIAKAAHKTG................................................................................................... 102

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;