current user: public
If you have questions about the server, please let us know.

Query: [C] COG3658 Cytochrome b, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .
# Score Template Links and tools%idFirst MKNKTKVWDFPTRLFHWLLAASLPFMWYSAKTGGDMLQWHTRVGLFILFLLVFRLCWGIWGSDTARFSRFVRGWSGIREYMKNGIPEHVQPGHNPLGALMVVALLAAVSFQVGTGLFAADENTFSTNGYLNHLVSEHTGSLMRKIHLNFFKLLAVFSAVHIAAVAAYRVFKKKNLVLPMITGFKYIEGKTSIRFAGKAALAAALSVAALAAAAILLLSLast
1 -76.0004gd3_A mol:protein length:235 Ni/Fe-hydrogenase 1 B-type cytochrome subunit  ali model follow..  16  9..VSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMVNGYRSHKFGKISNKERS..................... 235
2 -39.8005oc0_A mol:protein length:189 Cytochrome b561  ali model follow..  18  1MENK---YSRLQISIHWLVFLLVIAAYCAMEFRGFINMIHVSCGISILVLMVVRLLLRLKYPTPP-------------------IIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLLRMMPRKRSSVPGS............................ 181
3 -33.2001kqf_C mol:protein length:217 FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556(FDN) SUBUNIT  ali model follow..  12  4.SKMIVRTKFIDRACHWTVVICFFLVALSGISPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDK-KDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPY-------FAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWV-----KGSIKGMIEGKVSRR............................... 191
4 -9.8004o6y_A mol:protein length:230 Probable transmembrane ascorbate ferrireductase 2  ali model follow..  15  80...........KKLVHLTLQLTAFILSLIGVWAENFYSLHSWLGLACLFLFAFQWAAGFV--------------TYWYPGGSRNSRASLMPWHVFLG----ISIYALALVTATTGIL--------EKVTFLQVNQVITRYSTEAMLVNTMGVLILILGGFVILGVVTPVSGKDQV........................................... 227
5 -9.0301q90_B mol:protein length:215 Cytochrome b6  ali model follow..  19  39......................................................................................................ITFTCFLVQVATGFAMTPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGGFKRPRTVSFGVTGY................................... 136
6 -8.9502zt9_A mol:protein length:215 Cytochrome b6  ali model follow..  20  39......................................................................................................ITLVCFLIQFATGFAMTPTVAEAYSSVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRTVSFGVTGY................................... 136
7 -8.8801vf5_A mol:protein length:215 CYTOCHROME B6  ali model follow..  22  39......................................................................................................ITLTCFLIQFATGFAMTPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRTVSFGVTGY................................... 136
8 -8.5801q16_C mol:protein length:225 Respiratory nitrate reductase 1 gamma chain  ali model follow..  13  54.............LFHIGILGIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGLIGGVLLLKRRLFSPRVRA------------------TTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVT-LHLVLGMTLFLLFLIHIWSVPVEYLTRKYQLVRA........................................ 223
9 -8.4605gup_w mol:protein length:379 Cytochrome b  ali model follow..  17  36......................................................................................................LLGICLILQILTGLFLTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSYMFLEVMATAFMGY................................... 131
10 -8.4501be3_C mol:protein length:379 CYTOCHROME BC1 COMPLEX  ali model follow..  18  36......................................................................................................LLGICLILQILTGLFLASDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLEVMATAFMGY................................... 131
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.