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Query: [KT] COG3835 Sugar diacid utilization regulator, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MILDSQLAQQIVDRTMAIIGYNINVMNQAGVIIGSGEKNRIGQVHDGAILALKHGDSVELTAESCVALKGVKPGINMVLRNQQQVVGIVGITGEPKDIRDFANLVKMSAEMIIEQAALVEQLQWDRRHREEFISAWIHNTLSAAELDAWAARLSIDLSKPRVAVVIAFRQPKSGQSLDQIRQVVELLEHPERDNLVAVVSMQEIVVLKPCRTPEHWTSEYESLRIDKLMARLKAYDITGYDIALGQLFINPNAIHLSYQSAKQVLRIGQVRQPEKQKHLYEELRLPVLLLPLNEGWQGEQWRRVMQELQTQDKSGQLVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEITGIETNSLLGLAELYIAYQLTSYDLast
1 -58.3003onq_A mol:protein length:262 Regulator of polyketide synthase expression  ali model follow..  13  1........................................................................................................SNAMNSEQADILDLLSGHTDDTTIERLAFECLLTNM-TDDRVVSLMNILGWQGDFNCFAIGGVPSASLA----STSLAIRKAVRDLGGEHVVIGTYGTFLLALACQMGAVTP---------EVTCTAVMPAFSEDEPLYLSPVRSGVAGASHALRETMFSLQAAPALSTPSRPLRADELLPERALLG-DDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRM. 259
2 -29.0005loe_A mol:protein length:262 GTP-sensing transcriptional pleiotropic repressor CodY  ali model follow..  9  20AAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIEN-VPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAIEEEARSKAVVQMAISSLSYSEL--EAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELENLKSH............................................................................................................................................................. 262
3 -27.3005lnh_A mol:protein length:263 GTP-sensing transcriptional pleiotropic repressor CodY  ali model follow..  9  16AAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIEN-VPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAIEEEARSKAVVQMAISSLSYSEL--EAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLN.......................................................................................................................................................................... 245
4 -26.6005ey2_A mol:protein length:276 GTP-sensing transcriptional pleiotropic repressor CodY  ali model follow..  9  28AAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIEN-ITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAIEEEARSKAVVQMAISSLSYSEL--EAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNDKFLQELAK................................................................................................................................................................. 266
5 -26.0005ey0_B mol:protein length:274 GTP-sensing transcriptional pleiotropic repressor CodY  ali model follow..  9  28HKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKS-VKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHVEKEARDKAAITMAINSLSYSEK--EAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGTFIKVKKEKFLDELEK................................................................................................................................................................. 266
6 -19.8002gx5_A mol:protein length:170 GTP-sensing transcriptional pleiotropic repressor codY  ali model follow..  10  21AAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIEN-VPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE................................................................................................................................................................................................................................................................ 164
7 -18.2005n0l_A mol:protein length:159 GTP-sensing transcriptional pleiotropic repressor CodY  ali model follow..  10  22SGGSSVSFDLLAGALGDVLSSNVYVVSAKGKVLGLHLNDVTQNVLKIDETLENLNGEKILEIFPEEHGRLQKYTTVVPILGSGQRLGTLVLSRYSNSFNDDDLVIAEYSATVVGLEIL..................................................................................................................................................................................................................................................................... 159
8 -12.4001umq_A mol:protein length:81 PHOTOSYNTHETIC APPARATUS REGULATORY PROTEIN  ali model follow..  22  32....................................................................................................................................................................................................................................................................................................................ADRVRWEHIQRIYE---MCDRNVSETARRLNMHRRTLQRILAK............................ 71
9 -10.8004fth_A mol:protein length:69 Transcriptional regulator (NtrC family)  ali model follow..  15  18................................................................................................................................................................................................................................................................................................................LKEAKKEFEKIFIEEKLR---EYDYDLKRTAEEIGIDLSNLYRKIKSL----NIRVKS................. 68
10 -10.5001ntc_A mol:protein length:91 PROTEIN (NITROGEN REGULATION PROTEIN (NTRC))  ali model follow..  17  28................................................................................................................................................................................................................................................................................................LAQWADRALRSGHQNLLSEAQPELERTLLTTALR---HTQGHKQEAARLLGWGAATLTAKLKELG.......................... 89
11 -10.3002m8g_X mol:protein length:70 Transcriptional regulator  ali model follow..  19  19................................................................................................................................................................................................................................................................................................................LPKFIEETEKKRIIEALE---KTGYVKSRAAKLLGYTLRQLDYRIKKY----GIELKKF................ 70
12 -9.7201etv_A mol:protein length:98 FACTOR FOR INVERSION STIMULATION  ali model follow..  18  31............................................................................................................................................................................................................................................................................................VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ---YTRANQTRAALMMGINRGTLRKKLKKYG.......................... 96
13 -9.7201etk_A mol:protein length:98 FACTOR FOR INVERSION STIMULATION  ali model follow..  19  31............................................................................................................................................................................................................................................................................................VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMA---YTRGNQTRAALMMGINRGTLRKKLKKYG.......................... 96
14 -9.6201etq_A mol:protein length:98 FACTOR FOR INVERSION STIMULATION  ali model follow..  15  2................................................................................................................................................................................................................................................................FEQRVNSDVLTVSTVNSQDQVTQKPRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ---YTYGNQTRAALMMGINRGTLRKKLKKYG.......................... 96
15 -9.6001eto_A mol:protein length:98 FACTOR FOR INVERSION STIMULATION  ali model follow..  19  31............................................................................................................................................................................................................................................................................................VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ---YTLGNQTRAALMMGINRGTLRKKLKKYG.......................... 96
16 -9.5801ety_A mol:protein length:98 FACTOR FOR INVERSION STIMULATION  ali model follow..  19  31............................................................................................................................................................................................................................................................................................VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ---YTRGNQTRAALMMGINRGTLRKKLKKYG.......................... 96
17 -9.5501etw_A mol:protein length:98 FACTOR FOR INVERSION STIMULATION  ali model follow..  18  31............................................................................................................................................................................................................................................................................................VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ---YTRDNQTRAALMMGINRGTLRKKLKKYG.......................... 96
18 -9.5401fip_A mol:protein length:98 FACTOR FOR INVERSION STIMULATION (FIS)  ali model follow..  19  31............................................................................................................................................................................................................................................................................................VKQALKNYFAQLNGQDVNDLYELVLAEVEQALLDMVMQ---YTRGNQTRAALMMGINRGTLRKKLKKYG.......................... 96
19 -9.5401f36_A mol:protein length:98 FIS  ali model follow..  19  31............................................................................................................................................................................................................................................................................................VKQALENYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ---YTRGNQTRAALMMGINRGTLRKKLKKYG.......................... 96
20 -9.4604fis_A mol:protein length:98 FACTOR FOR INVERSION STIMULATION (FIS)  ali model follow..  18  31............................................................................................................................................................................................................................................................................................VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ---YTRGNQTRAALMMGINRGTLCKKLKKYG.......................... 96
21 -9.3101etx_A mol:protein length:98 FACTOR FOR INVERSION STIMULATION  ali model follow..  19  31............................................................................................................................................................................................................................................................................................VKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQ---YTRGNATRAALMMGINRGTLRKKLKKYG.......................... 96
22 -9.0902cob_A mol:protein length:70 LCoR protein  ali model follow..  15  15........................................................................................................................................................................................................................................................................................................................NSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE............................ 53
23 -9.0103hcy_A mol:protein length:151 Putative two-component sensor histidine kinase protein  ali model follow..  10  5....EEVYEATLDAIQGALNCDILLFDEAGTMRFVAARGLSEHYQRAV-TGANEPEPIFVENVDDAEFEGIAALGFFPLVTEGRLIGKFMTYDRPHRFADSEIGMALTIARQLGFSIQRMRAEYARRQAEE........................................................................................................................................................................................................................................................ 151
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.