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Query: [R] COG3907 PAP2 (acid phosphatase) superfamily protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MITVPLFATSASGHTVKISKTTRQASTGPSTLNNRSTVPTIKTISLYSLPLSFYFWQVFGLLLVGLLFLALSRSEQLDWLISNYWFDPVGQNFPWEHNKWLDLLNHRLLKMALIATAIAALLWGIYRRNGRLVTTALLFGLGPLVIGILKATSAHSCPWDLVEYGGKALNYVLMDTAPPGAGPGHCFPGGHASSGFAVMALFFLFYPERPRLAMLCWFAGIGLGMLMGFGQIMRGAHFLTHNLWAGWWVWLSQLAAFWIISGYYQRIKGTELast
1 -48.5004px7_A mol:protein length:262 Phosphatidylglycerophosphatase  ali model follow..  13  4............................................................IARRTAVGAALLLVMPVAVWISGWRWQPGEQSWL---LKAAFWVTETVTQPWGVITHLILFGWFLKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHMPVDKFYTLKRQKETGFAFPSGHTMFAASWALLAVGLLWPRR--RTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPA 241
2 -48.4005jwy_A mol:protein length:259 Phosphatidylglycerophosphatase B  ali model follow..  13  1.........................................................MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWL---LKAAFWVTETVTQPWGVITHLILFGWFLKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHIPVDEFYTLKRQKETGFAFPSGHTMFAASWALLAVGLLWPRR--RTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPA 241
3 -48.3005jki_A mol:protein length:222 Putative lipid phosphate phosphatase YodM  ali model follow..  17  3.................................................SGRENLYFQGHMYKPVSLFLFFLILAAADEAISKAAVLIRQPWL----NEVMTGITHLGASFLLPLIVIIGAGMFFYRKTWDGLLMLLVFGTDRLLNKVLKEWIERVRP----------------DFAPLVHESSFSFPSGHSMNAACVYPVIAYFLPFLSKHKKMVYIIAGVIAVLVGISRVYLGVHFVTDVLGGFSLGLLLFFLVKGFDEKIKRFRQK.. 216
4 -30.5001d2t_A mol:protein length:231 ACID PHOSPHATASE  ali model follow..  15  79.................................................................................................................FSGAFGSPITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFYG-------STCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEINPQRQN-------EILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLHTNPAFQQQLQKAKA 223
5 -30.5002ipb_A mol:protein length:230 Class A nonspecific acid phosphatase PhoN  ali model follow..  14  67.................................................................................................................FSPVVGAKINPKDTPETWNMLQNLLKMGGYYATASAKKYYMRTRPFVLFN-------STCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARPERAQ-------ELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQTIPAFQKSLAKVRE 211
6 -29.8002a96_A mol:protein length:250 class A nonspecific acid phosphatase PhoN  ali model follow..  14  87.................................................................................................................FSPVVGAKISPKDTPETWNMLQNLLKVGGYYATASAKKYYMRTRPFVLFN-------STCRPEDENTLRKDGSYPSGHTAYSTLLALVLSQARPERAQ-------ELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQTIPAFQKSLAKVRE 231
7 -17.3004cit_A mol:protein length:458 VANADIUM-DEPENDENT HALOPEROXIDASE  ali model follow..  6  306.................................................................................................................................FAYTKASVAMADAFISCWDEKYRSNLIRPETVINQHIDDSWKPVL-----QTPPFPEYTSGHSVVSGAASVVLTEVFGDNFSFDDDTFKSFKQAADEAAISRMYGGIHYRAAIEVGVKQGRDLGTFVVNKLHMLSDKKVAQN 452
8 -16.6001idq_A mol:protein length:609 VANADIUM CHLOROPEROXIDASE  ali model follow..  9  228..KTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRS-----------------------WQTAQGLYWAYDGSNLIGTPPRFYNQIVRRIAVTYKKEEDLANSEVNNADFARLFALVDVACTDAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATN-AYPSGHATFGGAVFQMVRRYYNGRRHFDSAWELM-------NAISRIFLGVHWRFDAAAARDILIPTTTKDVYAVDN......... 521
9 -16.1005lpc_A mol:protein length:666 Vanadium-dependent bromoperoxidase  ali model follow..  11  480.................................................................................................................................KPVAALVEALENVGLLSKVVAHNQLQNQNLDRSG-AGDNYFLPM--AFPEGSPMHPSYGAGHATVAGACVTMLKAFFDHGWQLNLGMANGKYIIAANISIGRDWAGVHYFTDYIESLRLGEKIAIGILE............. 637
10 -15.4003w35_A mol:protein length:531 NapH1  ali model follow..  8  266..VTPQTARTKAHIFRDPSRFRIPRPEFSDHTNTRAYKRSVDEIIDASANL-----------------------NDERKALAEIMEN--------------KLWGIGHSSIVIANKYDQNNEMGVHGWCHWMLAHVLATFEPLIAAWHHKTRFDAVRPVTAIRHVYGNRKIRAWGSSYLPVGDHPEYPSGSTSLCSATSQAARRYFDSDEKDLSIHIPTWTDFTRTCATSRVWGGVHFQTTVDRTIDFGEQFGDLAHEFVQR......... 523
11 -15.3001qi9_A mol:protein length:556 PROTEIN (VANADIUM BROMOPEROXIDASE)  ali model follow..  15  413.........................................................................................................................................................................................SYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVY--LAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLH............. 507
12 -14.8001up8_A mol:protein length:598 VANADIUM-DEPENDENT BROMOPEROXIDASE 1  ali model follow..  13  482.........................................................................................................................................................................................SYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDK--LADNIAIGRNMAGVHYFSDQFESLLLGEQVAIGILE............. 574
13 -14.4001qhb_A mol:protein length:596 HALOPEROXIDASE  ali model follow..  13  480.........................................................................................................................................................................................SYGSGHAVVAGACVTILKAFFDANFQIDQVFEVDT--LADNVAIGRNMAGVHYFSDQFESLLLGEQIAIGILE............. 572
14 -11.6005dir_A mol:protein length:188 Lipoprotein signal peptidase  ali model follow..  10  16.............................................................................................................................DVDRFGRLPWLWITVLVFVLDQVSKAFF-----QAELSMYQQIVVIPDLFSWTLAYNTGAAF----LIAIVVSASLVVWLKRLKKGETWLAIALALVLGGALGYDRMVLGHYFPAFNLADSAITVGAVMLALDMFRSKKSGEAAH. 181
15 -11.1005aa6_A mol:protein length:597 VANADIUM-DEPENDENT BROMOPEROXIDASE 2  ali model follow..  13  426.........................................................................................................................................................................................AYPSGHAINLGAYLTVLKAFLGFELGQRCFPSPMI--VTSNVAIGRSHLGVHWRMDGVFGAEMGEAGAIRRLQQELGGLPEARDTE 550
16 -9.2304qnz_A mol:protein length:200 Rhomboid protease GlpG  ali model follow..  10  11......................................................TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEF----RYFTHALMHISLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--------------------------------GGLSGVVYALMGYVWLRGERDPQRGLIIFALIWIVAGWFDLFSMANGAH-----IAGLAVGLAMAFVDSLNARKRKASLEREN 197
17 -9.0704njn_A mol:protein length:211 Rhomboid protease GlpG  ali model follow..  11  2..............................GSSSSGLVPRGSHMAALRERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEF----RYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--------------------------------GGLSGVVYALMGYVWLRGERDPQRGLIIFALIWIVAGWFDLFSMANGAH-IAGLAVGLAMAFVDS.................. 198
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.