current user: public
If you have questions about the server, please let us know.

Query: [S] COG4241 Predicted membrane protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310
# Score Template Links and tools%idFirst MYQTRPLTEGAVFASLFAVLFVITFFVPFIAFITMWFLPIPFLLYTLRHGLKPAVIVLLVASVVVMLILGPLLLLLALLFGTSGVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETMRQSMQTAEQLIIGLGQEPSEALKQMEESINQLFYLGPAMVVICGTLLAAVTQLVAAPILKRLRHEVKPLPPFRTWSFPRSFLFYYLAVVVLFMIGFEEGSMPYIAVWNLLPVLEIIMAIQGFAVIFAYFHTKGVAKAVPVIIMILCIIVTPLLYLVRIIGIIDLGFDLRKRMGSQGKLast
1 -17.2005kc0_A mol:protein length:190 Riboflavin transporter RibU  ali model follow..  16  1MSSIKKISFVGIFSALATLVMFLEFPIFPQASFLKYPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMGDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALI............................................................................................................................................................................................. 126
2 -14.9005kbw_A mol:protein length:181 Riboflavin transporter RibU  ali model follow..  15  4..SIKKISFVGIFSALATLVMFLEFPIFPQASFLKYPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMGDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALI............................................................................................................................................................................................. 127
3 -14.6003p5n_A mol:protein length:189 Riboflavin uptake protein  ali model follow..  21  9MQQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFV............................................................................................................................................................................................. 134
4 -13.9003rlb_A mol:protein length:192 ThiT  ali model follow..  20  9..NVRLLTEIAFMAALAFIISLIPNT---YGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYIL-YLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIF............................................................................................................................................................................................. 134
5 -13.0004tkr_A mol:protein length:214 Thiamine transporter thia  ali model follow..  18  23..RLIILLECAIFAAVAMVLSFIPLDIGSSFSIS--LGMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTGKAYIL-YILAFSFIAFS-NLAANQLKKAIEWAWGTMIIGGVARYFWHYVAGVLF............................................................................................................................................................................................. 156
6 -10.7004z7f_A mol:protein length:199 Folate ECF transporter  ali model follow..  19  21..GTKSIALMGVLIAVVVVFSRFFAYETTFLKI---FTFIPESLIGMIFGPFWAGIGTAVADVVGMLLFAGYFPGFTLNAFLAGAIYGYFYYKKEMTWQRVILATLLVTVLINIIL.................................................................................................................................................................................................... 134
7 -10.6005d3m_C mol:protein length:184 S-component for folate  ali model follow..  12  10KLELRELVLLAMVIAIKVILGQFKVGNATLQVGLGF---IGSVMLGYLFGPWWGFAGGALSDLVSSVIFGNLGGFFTLTAALGPMIYGFFLYKQPIQIWRVIASVICVICNIGLNTLWVSMMYGINFMVALSSRILKEM............................................................................................................................................................................. 150
8 -10.6004hzu_S mol:protein length:166 Predicted membrane protein  ali model follow..  15  5..SLKENTIAAVLIAMTVALILVVIPIPATKGIVTL---VGIYTSAILYGRRMGLLVGGASGFLIDILTGVWCLFSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLL............................................................................................................................................................................................. 127
9 -10.6005d0y_A mol:protein length:184 Conserved hypothetical membrane protein  ali model follow..  13  10KLELRELVLLAMVIAIKVVLGQFKVGDATLQVGLGF---IGSVMLGYLFGPWWGFAGGALSDLVSSAIFGNLGGFFTLTAALESMIYGFFLYKKPIQIWRVIASVICVICYIGLNTLWVSMLGGTNFMVALSSRILKEM............................................................................................................................................................................. 150
10 -10.0004huq_S mol:protein length:174 Uncharacterized protein  ali model follow..  16  10..DTLSMVTMGVLMALQLVISRFSVGNNFIKVSFTF---LIVALIAKWFGPWWGMLTAAVVDVIGTLMTGPFFIGFTVSAVLGSLIYAVFLYRQPVSWWRVIGASVLIALLVNTLL.................................................................................................................................................................................................... 121
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.