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Query: [V] COG4452 Inner membrane protein involved in colicin E2 resistance, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLKSPLFWKMTSLFGAVLLLLIPIMLIRQVIVERADYRSDVEDAIRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEERKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNITLGKPFIVISVGDARGIGVVKAPEVNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLKLNMALNLSGTGDLSVVPGGRNSEMTLTSNWPHPSFLGDFLPAKREVSESGFQAHWQSSWFANNLGERFASGNDTGWENFPAFSVAVTTPADQYQLTDRATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIGAIMNGIYLQAVLKGWCNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTTDDELRIWKLast
1 -8.4304qtn_A mol:protein length:244 Nicotinamide riboside transporter PnuC  ali model follow..  13  67.......................................................................................................................................................................................................................................................................................FGLISVSLYAYVSYTFKLYGEMMLNLLVYVPVQFEEVKAKALTVRQWLLVVAASVVGTSVYIEWLHHLGSALPTLDGVTVVVSIVAQVL--MILRYREQWALWIVVNILTISLWAVAWFKNGETSLPLLLMYV-MYLCNSVYGYINWTKLVKRHSGQ.............. 238
2 -7.7905yua_A mol:protein length:271 Ion transport protein  ali model follow..  12  31.........................................................................................................................................................................................................................................................................................ITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGE--SFYTLFQVMTLESWSMG..................... 186
3 -7.6902i68_A mol:protein length:137 Protein emrE  ali model follow..  14  4.........................................................................................................................................................................................................................................................................................................YIYLGGAI------LAEVIGTTLMRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRSTP................................................ 109
4 -7.4506cfw_D mol:protein length:96 MBH subunit  ali model follow..  15  1...............................................................................................................................................................................................................................................................................................................................................MHISKKKGVRKMNLDMIIQFI-VLGGIILSSVLMIVTRDLLVAVLASAAMSLLLSLEFYMLHAPDVAIAEAAVGAGVVTALVMYAISKTE......................... 89
5 -7.4405vb2_A mol:protein length:285 Ion transport protein  ali model follow..  12  45.........................................................................................................................................................................................................................................................................................ITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGE--SFYTLFQVMTLESWSMG..................... 200
6 -7.3903rvy_A mol:protein length:285 Ion transport protein  ali model follow..  12  45.........................................................................................................................................................................................................................................................................................ITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGE--SFYTLFQVMTLESWSMG..................... 200
7 -7.1905klb_A mol:protein length:285 Ion transport protein  ali model follow..  12  45.........................................................................................................................................................................................................................................................................................ITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGE--SFYTLFQVMTLDDWSNG..................... 200
8 -7.0304he8_J mol:protein length:176 NADH-quinone oxidoreductase subunit 10  ali model follow..  20  20..................................................................................................................................................................................................................................................................................................VTLRNAIHAALALILNFLVL-VYVALDARFLGFIQVIVYAGAIVVLFLFVIMLLFAFDPLVRSRPLAALLALGVAGILAAGLWGLDLAFTQDLKGGLPQALGPLLYGDWLFVLLAVGFLLMAATVVAVALVEP........................... 159
9 -6.3803jbr_E mol:protein length:222 Voltage-dependent calcium channel gamma-1 subunit  ali model follow..  12  25...........................................................................................................................................................................................................................TAVVSDW----VLSPHMENHNTTCEAAHFGLWRICTKRIALGEDRSCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAISVFSLG------------FLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIDSE------IEYYYSWSFACACA---AFVLLFLGGISLLLFSLPRMPQNPWESCMDAEPE............... 221
10 -6.3405ek0_A mol:protein length:296 Chimera of bacterial Ion transport protein and human Sodium channel protein type 9 subunit alpha  ali model follow..  9  40.....................................................................................................................................................................................................................................................................................IVLNMVTMMVEKEGQSQHMTEVLYWINVVFIILFTIEIILRIYVHRISFFKDPWSLFDFVVVIISIVG-MFLADLIETYFVSPTLFRVIRLARIGRILRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFSFYTLFQVMTLESWSMG..................... 211
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.