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Query: [M] COG5434 Endopolygalacturonase, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MILSHRYTLIALAAAILSSGAHAAGASVTASWGNVAEPSLPADSAVCKTLAATITPVSGSIDTVDGNPSNSQPDASRIQTAIDNCPAGQAVRLVKGSAGESGFLSGSLKLKSGVTLWIDTGVTLFASRNPADFDNGVGTCGTATTSNTKSCNALIVARDTVGSGIVGDGIIDGRGGSLVTSGPNANRLTWWDIAYLNKTKGLNQQNPRLVQLYNGSAFTLYRVTVQNSPNFHIVTTGTAGVTAWGIKIVTPSLAYTVPGYKCAAGTTPDKVTPATCFTPETVKNTDGFDPGQSTNVVLANSYISTGDDHVAIKASGGATRNLLFAHNHFYYGHGLSIGSETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVKEPLVFDPFYSTAKGSLYPNFTNIVVKNFHDLGSAKGIARTMTFLGYEAKKRTNPLTLTLDNVVFDGTQPAFDVAHNGGPASPNGTHFTFGGNGPVSFANAIVTSSTTDVTVTGTPGTAAAVDCSNAFVPLKSVAPTSPILast
1 -80.4002uve_A mol:protein length:608 EXOPOLYGALACTURONASE  ali model follow..  18  110...........IVMQNFTVIGLKPETSYQFTVKAQYADGSLSVASKPITAKTSAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSCKPGCRVEIP-----AGTYKSGALWLKSDMTLNLQAGAILLGSENPDDYPAGYRLYPYSTIERPASLPNNSKPGTFRNIRITGSGVIDGNGWLRAKTAEITDELG--VSDGMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIH-----------------------------QTYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGPMKGAWLFNNYFRMGHGIVTGSHTGAWIEDILAENNVMYLTD----IGLRAKSTSTIGGGARNVTFRNNAMRDLAKQVMVTLDYADSNAKIPAQFYDFTLKNVTVDNST--GKNPSIEIKGDTANKAWHRLVHVNNVQLNNVTPTAI--SDLRDSEFNKVTFTELRGDTPWHFSEVKNVKVDGKPVA........................... 607
2 -78.2001bhe_A mol:protein length:376 POLYGALACTURONASE  ali model follow..  43  3..................................................SRTVSEPKTPSSCTTLKADS-STATSTIQKALNNCDQGKAVRLSAGS--TSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFENAPSSC-GVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKL----QDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPS----------------------------TARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGETRNISILHNDFGTGHGMSIGSE-TMGVYNVTVDDLKMNGTT----NGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDWSDITFKDVT--------SETKGVVVLNGENAKKPIEVTMKNVKLTSDSTWQ.................................................................... 368
3 -77.5005olp_A mol:protein length:452 Pectate lyase  ali model follow..  16  3......................SSSSGPQQGLRQYKTVKVKAPFPMQPIKVFIYPDRDFKITDFGAVPGGEVDNTKAIAAAIDACNKAGGGRVVVPA---GIWLTGPVHFKSNINLCLEEDAVLSFTDNPEDYLPAVMTSWEGLE--CYNYSPLLYAFECENVAISGKGTLQPKMGTWKVWFKRPAPHLQAPVIERQMAIGENHLRPHLIHFNRCKNVMLDGFKIRESPFWTIHLYMCDGGIVRNLDVRAH------------------------------GHNNDGIDFEMSRNFLVEDCSFDQGDDAVVIKAGRNPCENIVIRNCRILKGHTLGIGSEISGGIRNIYMHDCTAPNSVMRL---FFVKTNHRRGGFIENIYMKNVASGTAQRVLEIDTEVLYQYEKRITRIDGIYMDKVTCES-------ADAVYELKGNAELPVKNVRIKDVKVGSVKKFVKKVSNVENVVEKNVTYS................................................... 443
4 -75.9003jur_A mol:protein length:448 Exo-poly-alpha-D-galacturonosidase  ali model follow..  17  11.........................................EEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPE---GVFLTGPIHLKSNIELHVKGTIKFIPDPERYLPV----VLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST------------------------------GPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDPSEYILVRDNLVASHGGLVIGSEMSGGVRNVVARNNVYMNVE----RALRLKTNSRRGGYMENIFFIDNVAVNVEEVIRINLRYDNEEGEYLPVVRSVFVKNLKATG-------GKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQLGMENVIMNGSRFEKLYIEGKALLK..................................... 448
5 -66.4004mxn_A mol:protein length:247 Uncharacterized protein  ali model follow..  22  5...............................................KIENLYFQGKDYQVAMFGIKSDGVTLNTRSIQRAVDYISEQGGGRLIFY---VGRYLTGSIELKSNVTIRIEEGAVLVAVPSVYDFKGV------------GGCNAIIYADKQKNIGIGGKGIIDGRSIAVRASVEEQLQKG-------HIEGNVSDYAPALICMEGCEDVKIEQVTLQDAANVAEIYKDCHNVTVDKVVVNAG------------------------------ASDRKAISISGCDGVKMTDCYFNMAGNPLESAG---TSRNLIFTNCITPDGKAVSSD................................................................................................................................................................................................. 240
6 -58.1001rmg_A mol:protein length:422 RHAMNOGALACTURONASE A  ali model follow..  16  10...............................................TSASTKGATKTCNILSYGAVADNSTDVGPAITSAWAACKSGGLVYIPSGNY----ALNTWVTLTGGSATAIQLDGIIYRTGTASGNM-----------------IAVTDTTDFELFSSTSKGAVQGFGYVYH---------------------AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-----------------------------NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSP---ANNILVESIYCNWSGGCAMGSLGATDVTDIVYRNVYTWSS----NQMYMIKSNGG-SGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDQLNNITVKNWKGTEA---NGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGS-SELYLCRSAYGSGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTS... 409
7 -55.1004c2l_A mol:protein length:388 ENDO-XYLOGALACTURONAN HYDROLASE A  ali model follow..  19  8..................................................APDSSIHARAVCTPTAGGDSSTDDVPAITEALSSCGNGGTIVFPEGS----TYYLNSVLDLGSCDCDIQVEGLLKFASDTDYWS---------------GRTAMISVSNVDGLKLTGSGVIDGNGQDAWDLFASDS----------------SYSRPTLLYITGGSNLEISGLRQKNPPNVFNSVKGATNVVFSNLKMDANS------------------------KSDNPPKNTDGFDIGESTYVTITEVTVVNDDDCVAFKPS---SNYVTVDTISCTGSHGISVGSLGKSSVKNIYVTGATMINS----TKAAGIKTYPSGGSTVSNVTFNDFTVDNSDYAFQIQSCYGEDDDYCEENPGNAKLTDIV-VSSFSGTTSDKVVANLDCGADGTC-GISISGFDVKAPSG--KSEVLCANTPSDLGVTCTSGAS.............................................. 387
8 -52.5002iq7_A mol:protein length:339 endopolygalacturonase  ali model follow..  19  1...................................................................ASCTFTDAAAAIKGKASCTSIILNGIVVPAGT--TLDMTGL--KSGTTVTFQ--GKTTFGYKEWE-------------------GPLISFSGTNNINGASGHSIDCQGSRWWD----------------SKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAG------------------------DSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSG----TNITFTGGTCSGGHGLSIGSVGGRSVKTVTISNSKIVNSD----NGVRIKTVSGATGSVSGVTYSGITLSNIAKGIVIEQDYENGSPTGTPT-NGVPITGLT-LSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNI............................................................... 331
9 -51.8001ia5_A mol:protein length:339 POLYGALACTURONASE  ali model follow..  18  1................................................................ATTCTFSGSNGASSASKSTSCSTIVLSNVAVPS---GTTLDLTKLNDGTH---VIFSGETTFGYKEWSG--------------------PLISVSGSDLTITGASSINGDGSRWWD----------------GEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSD------------------------GDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG----ENIYFSGGYCSGGHGLSIGSVGGRSVKNVTFVDSTIINS----DNGVRIKTNIDTTGSVSDVTYKDITLTSIAKGIVVQQNYGDTSSTPT---TGVPITDFV-LDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGGKTSSKCTNVPSGAS.......................................................... 338
10 -51.8001czf_A mol:protein length:362 POLYGALACTURONASE II  ali model follow..  17  5.............................................ASLLAYGLVAGATFASASPIEARDSCTFTTAAAAKAGAKCSTITLNNIEVPA---GTTLDLT-GLTSGTKVIFE--GTTTFQYEEWAGPLI-----------------SMSGEHITVTGASG-HLINCDGARWWD-----------------GKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDITFTDVTINNAD------------------------GDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG----ENIWFTGGTCIGGHGLSIGSVGDRSVKNVTIEHSTVSNS----ENAVRIKTISGATGSVSEITYSNIVMSGISDGVVIQQDYEDGKPTGKPT-NGVTIQDVK-LESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGKKSTACKNFPSVAS.......................................................... 361
11 -51.1001hg8_A mol:protein length:349 ENDOPOLYGALACTURONASE  ali model follow..  19  1....................................................................DPCSVTEYSGLATASSCKNIVLNGFQVPTGK--QLDLSSLQNDSTVTF----KGTTTFATTADNDFNPI----------------VISGSNI-TITGASGHVIDGNGQAYWDGKGSNSNSN-------------QKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRA----------------GDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG----TNIVVSNMYCSGGHGLSIGSVGGKSVDGVQFLSSQVVNS----QNGCRIKSNSGATGTINNVTYQNIALTNISTGVDVQQDYLNGGPTGKPT-NGVKISNIK-FIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAITGGGKTSSCNY................................................................ 342
12 -51.1004mr0_A mol:protein length:648 Plasmin and fibronectin-binding protein A  ali model follow..  14  66..............TIRSNSQLDNRTVESTVTSTNENKSYKEDVISDRIIKKEFEDTALSVKDYGAVGDGIHDDRQAIQDAIDAAAQGGGGNVYFP---EGTYVKEIVFLKSHTHLELNEKATILNGINIKNHPSIVFMTGLFTDD-----GAQVEWGPTEDISYSG-GTIDMNGALNEEGTKAKNLPL--------------INSSGAFAIGNSNNVTIKNVTFKDSYQGHIQIAGSKNVLVDNSRFLGQALPKTMKDGQIISKESIQI-------TRKGFPYALNDDGKKSENVTIQNSYFGKSDKSGELVTATQNPSNIKILNNHF---DNMMYAGVRFTGFTDVLIKGNRFDKK----VKGESVHYRESGAALVNAYSYKNTKDLLDLNKQVVIAENIKDSAEYLGKVSDITVTKNVINNNSKETEQP------NIELLRVSDNLVVSENSIFGGKEGIVIEDSKGKITVLNNQFYNLSGKYISFIKSNANGKEPVIRDSDGN........................ 544
13 -50.7001nhc_A mol:protein length:336 Polygalacturonase I  ali model follow..  20  1.........................................................................STCTFTSAISSCSDVVLSSIEVPA---GETLDLSDAADGST---ITFEGTTSFGYKEWK-------------------GPLIRFGGKDLVTMADGAVIDGDGSRWWD----------------SKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLNDFTIDNSD------------------------GDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG----ESISFTGGTCSGGHGLSIGSVGGRDVKNVTISDSTVSNS----ANGVRIKTIYKETGDVSEITYSNIQLSGITDGIVIEQDYENGSPTGTPS-TGIPITDVT-VDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLSGGKTSDKCENVPSGAS.......................................................... 335
14 -45.6001k5c_A mol:protein length:335 ENDOPOLYGALACTURONASE  ali model follow..  19  2.......................................................................TCTVKSVDDAKDIAGCSAVTLNGFTVPAGNTLVLNPDKGAT-----VTMAGDITFAKTTLDG--------------------PLFTIDGTGINFVGADIFDGNGALYWDGKGTNNG-----------------THKPHPFLKIKGSGTYKKFEVLNSPAQAISVGPTDHLTLDGITVDD-----------------------FAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAINDG----NNIRFENNQCSGGHGISIGSIATGKVSNVVIKGNTVTRS----MYGVRIKAQRTATASVSGVTYDANTISGAKYGVLISQSYPDDVGNPG---TGAPFSDVN-FTGGATTIKVNNAATRVTVECGNCGNWNWSQLTVTGGKAG-TIKSDKAKITGGQ....................................................... 333
15 -45.0003zpp_A mol:protein length:443 CELL WALL SURFACE ANCHOR FAMILY PROTEIN  ali model follow..  15  3...........................................SSSSGLVPRGSHMTALSVKDYGAVGDGIHDDRQAIQDAIDAAAQGGGGNVYFP---EGTYVKEIVFLKSHTHLELNEKATILNGINIKNHPSIVFMTGLFTDD-----GAQVEWGPTEDISYSG-GTIDMNGALNEEGTKAKNLPL--------------INSSGAFAIGNSNNVTIKNVTFKDSYQGHIQIAGSKNVLVDNSRFLGQALPKTMKDGQIISKESIQIEPLTR----KGFPYALNDDGKKSENVTIQNSYFGKSDKSGELVTAIGNPSNIKIQNNHF---DNMMYAGVRFTGFTDVLIKGNRFDKK----VKGESVHYRESGAALVNAYSYKNTKDLLDLNKVVIAENIAKDSAEYLGKVSDITVTKNVINNNSKETEQ------PNIELLRVSDNLVVSENSIFGGKEGIVIEDSKGKITVLNNQFYNLSGKYISFIKS....................................... 437
16 -42.1003lmw_A mol:protein length:473 Iota-carrageenase, CgiA  ali model follow..  14................................................VAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRPNGGTLLIPN---GTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKN--------------HRLFEVGVNNIVRNFSFQGLGLVDFKDSRDK--------------------------NLAVFKLGDVRNYKISNFTIDDVTERNGRLHWSRNGIIERIKQNNA------------------------------LFGYGLIQTYGADNILFRNLHSE-GGIALRMETDNLGIRNIFADNIRCSKGLAVMFGPH-FMKNGDVQVTNVSSVSCG----SAVRSD-----SGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPGSFGTVKVFDVTA------RFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSK-----QGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNT............. 444
17 -37.8002vji_A mol:protein length:600 TAILSPIKE PROTEIN  ali model follow..  12  34...................................................SDVLDERVSLWDFHCDPSGNVDSRQYLQAAIDYVSSNGGGTITIPA---GYTWSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVF----------VGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASS----------------------QLRNGVAFGRSYNCSVTGITFQNGDVTWAWNGYGSNCYVRKCRFIN---------------------------LVNSSVNADHSTV-NCPYSGVESCYFSMSSSFARNIACS-HQHDTFYRGSTVNG-RGAYVAAGAGSYAYNMQVENNIAVIYGQFVI--LGSDVTATVSGHLNDVIVSGNIVSIGERA-FIDIGPDNSGASNVQDIQRVLVTGNSFYAPANITDSAAITL------RANLNGCTFIANNFDCRYMVYNAPGTTDKSNVIGGTHANQRAGQNLFDMQFASVVNSTIEVQLSCEDLSM................... 474
18 -37.4001wmr_A mol:protein length:549 Isopullulanase  ali model follow..  10  171.............................................................NSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFN---PGVYYFTGVLSSSVTWVYFAPGAYVKGA--------------------------VEFLSTASEVKASGHGVLSGEQYVWYADPDEGYQKA-------SGANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMNSLDLITCRVDDYKQVGA------------------------------YGQTDGLEM--YPGTILQDVFYHTDDDGLKMYY-----SNVTARNIVMWKESVVVEFGWTPRNTENVLFDNVDVIHQAYANAG--SNHSTGNSNMTVRNITWSNFRAEGSSSALFRINPIQNLDN----SIKNVSIESFEPLSINTTESWMPVWYDLNNGKQITVTDFSIEGFTVGNTT------------------ITASNAASVGRIDGVDPAYAGSVHYID.......................... 549
19 -33.3001ogm_X mol:protein length:574 DEXTRANASE  ali model follow..  11  200...........................................................PFLPSGMIPHMTPDNTQTMPGPINNGDWGAKSILYFP---PGVYWMNQRLNSNTYWVYLAPGAYVKGA---------------------------IEYFTKQNFYATGHGILSGENYVYQANAGDNYI--------AVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGSQISDYKQVGA------------------------------FFQTDGPEI--YPNSVVHDVFWHVNDDAIKIYY-----SGASVSRATIWKCHNIIQMGWTSRDISGVTIDTLNVIHTRYIKSEPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKN----VVKNVAFPDGLQ------TNSIGTGESIIPAASGLTMGLAISAWTIGGQK....................................................................... 547
20 -30.8002pyg_A mol:protein length:377 Poly(beta-D-mannuronate) C5 epimerase 4  ali model follow..  12  2.........................................................DYNVKDFGALGDGVSDDRASIQAAIDAAYAAGGGTVYLPA---GEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLI----DGSDQKITGMVRSAYGEETSNFGMRD-LTLDGNRDN------------------TSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPHETINLTIRDSVAHDNGLD-----------VADYLVDSVFENNVAYANDRHGFNVVSTHDFVMTNNVAGNGSSGLVVQRGLEDPSNILIDGGAYNAREGVLLKMTSDITLQNADIHG--------NGSSGVRVYG--AQDVQILDNQIHDNAQAAAVPEVLLQSFDTAGASGTYYTTLNTRIEGNTISGSANSTYGI-------QERNDGTDYSSLIDNDIAGVQQPIQLYGPHSTVSGEP....................................................... 377
21 -29.8005lw3_A mol:protein length:387 Poly(beta-D-mannuronate) C5 epimerase 6  ali model follow..  13  2.........................................................DYNVKDFGALGDGVSDDRVAIQAAIDAAHAAGGGTVYLP---PGEYRVSAAGEPSDGCLTLRDNVYLAGAGMGQTVIKLV----DGSAQKITGIVRSPFGEETSNFGMRD-LTLDGNRAN------------------TVDKVDGWFNGYAPGQPGADRNVTIERVEVREMSGYGFDPHETINLVLRDSVAHHNGLDGFVADYQIGGTFENNVA---------YANDRHGFNITSTNDFVMRNNVAGNGGNGLVVQRGSEHPENILIDGGSYNGLEGVLVKMSNNVTVQNADIHG--------NGSSGVRVYG--AQGVQILGNQIHDNAKTAVAPEVLLQSYDDTLGSGNYYTTLNTRVEGNTITGSANSTYGV-------QERNDGTDFSSLVGNTINGVQEAAHLYGPNSTVSGTVS...................................................... 378
22 -23.4004ru4_A mol:protein length:602 tail spike protein gp49  ali model follow..  8...................................................QFLEMGRVTPAQFGAVGDGASHPLSERYATLAEAQTDSGAPVHIP---SGDYINRGISSTGSLQIAGDGATSIIRPTAAFTGTSVLSCVGSLVALPNIS-SLTIDFASTPNLVAGDVFIIYNPTDSSFSGFRTSYRAGEFCEVRAVSGNTVTIRSANGLLVEAVVSPRVDDVTVTLANNAGVYFARCYDAKITNSNISNIG----------------------------DGGDDYGIIFGNCHDGGADNCKVYARRHAIATGGDAEPVRNVRMRNCTLRNDITSGTCADFHGNAEDCSYENCTIYGGATWQGKDISYRHCTITNAS-GTFLLDQCTLYTTGDPVIDVGGNSAVLTTNTTQPCNFLIQGGSLRAP--SLSTSSYLLRARLEGSTVPVNIQYSGQAIDVGSLGKVLQLDITSGSTSPEYLIVE................................................. 487
23 -21.6003suc_A mol:protein length:772 Preneck appendage protein  ali model follow..  11  2...........................................ADLVIQVIDELKQFGVSVKTYGAKGDGVTDDIRAFEKAIE-----SGFPVYVPY---GTFVSRGIKLPSNTVLTGARNAVIRFMDSVGRGESLMYNE---------------VTTGNENIFLSS-FTLDGNNKR-----------------LGQGISGIGGSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGL--------------------------------------DYPYLGDGTTAPNPSENIWIENCEAGFGDDGITTHH----SQYINILNCYSHDLTANCNGFEIDDGSRHVVLSNNRSKGC----YGGIEIKAHGDAPAAYNISINGHMSVEDVRSYNFRHIGHHAATAPQSVSAKNIVASNLVSIRPNNKRGFQDNATP-RVLAVSAYYGVVINGLTGYTDD....................................................................... 337
24 -20.6002x3h_A mol:protein length:542 K5 LYASE  ali model follow..  11  23......................DDKDPSSRSMAKLTKPKTEGILHKGQSLYEYLDARVLTSKPFGAAGDATTDDTEVIAASLN-----SQKAVTIS---DGVFSSSGI-NSNYCNLDGRGSGVLSHRSSTGNY---------------------LVFNNPRTGRLSN--TVESNKAT-------------------------DTTQGQQVSLAGGSDVTVSDVNFSNVKGTGFSLIAPDGLMIKGIRGSYSGYATNKAAGCVLADSSVNSLIDNVIAKNYPQFGAVELK-GTASYNIVSNVIGADCQHVTYNGTEGP-PSNNLIKGVMA---NNPKYAAVVAGKGSTNLISDVLVDYSTSDARQAHGVTV-EGSDNVINNVLMSGCDGTNS............................................................................................................................................ 337
25 -19.3002vbe_A mol:protein length:514 TAILSPIKE-PROTEIN  ali model follow..  49.......................................................KEAISILDFGVIDDGVTDNYQAIQNAIDAVASPSGGELFIPA---SNQVGSTLLIPGGVNIRGVGKASQLRAKSGLT-----------GSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVMVNE-------TAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSENAVYVHDCLDLHMEQLDLDCGSTGVVIENV---NGGFSFSNSWIADADGTEQFTGIYFRTPTSTQSHKIVSGVHINTANKNTAANNQS-EQSAIFVFVSGCTLTGDEWAVNIVDINECNKPLRYLRSGGVSVTDCYLAGITEVQKPEGRYNTYRGCSGVPSVNGIINVPVAVGATSGSAAIPNPGNLTYRVRSLFGDPAS----SGDKVSVSGVTINVTRPSPVGVALPSMVEY............ 511
26 -19.1004yz0_A mol:protein length:204 Pectate lyase  ali model follow..  15................................................................................................................................................................DTIIVKSGQTYDGKGIKII----------------AQGMGDGSQSQNQKPIFKLEKGANLKNVIIGAPGCDGIHCY--GDNVVENVVW--------------------------------EDVGEDALTVKSEGVVEVIGGSAKEAADAVFQLNA----PCTFKVKNFTATNIGKLVRQNGNTFKVVIYLEDVTLNNV----KSCVAKSDSPVSELWYHNLNVNNCK................................................................................................................................................ 184
27 -18.9004ru5_A mol:protein length:605 tailspike gp27  ali model follow..  10  8.......................................................NDTANVKDYGAIADGAYHPLSERFAAYQAAINSGAPHVHAP---GGHYMNRGTLAERDIRYTGDGYATRVDFSLADGPGSCMLTQGELVQIGDLS-ARTLTFAAAPDLAPGDVVIVYNPANGSWLADRDPYRAGEMWKVHSVSGSTVTIYGNVDVYRMRGVRVSVDQMHFSPSDTYAFRVVFGDGVKVSNYYASDVTRYTGLEVERCFDVSINAVSSPN---RSPAVNDEYGITISNCHNFSVYGGYAAATRHAVALGGMDAPNRNGLIYGMHIEGIHGNA-NCEFRNGVRDATVRNSTIYGVSSVSGEALYGTEVYGGTYTIENNRFISYGNGASFGIIHISP------GTSQREALLIIARNNTFELP--NATGSTKVLFLRGRNSPLPCSVNIDGMHVHMAPVAMQCFLFADDQVAATLNS.................................................... 481
28 -18.3004z05_A mol:protein length:204 Pectate lyase  ali model follow..  10  15................................................................................................................................................................DTIIVKSGQTYDGKGIKII----------------AQGMGDGSQSENQKPIFKLEKGANLKNVIIGAPGCDGIHCYG--DNVVENVVWED---------------------------------GADALTVKSEGVVEVIGGSAKEAADKVFQLNA----PCTFKVKNFTATNIGKLVRQNGNTFKVVIYLEDVTLNNV----KSCVAKSDSPVSELWYHNLNVNNCK................................................................................................................................................ 184
29 -18.2004y9v_A mol:protein length:625 Particle-associated lyase  ali model follow..  2.................SGSTVANNVTNPNVDMTGWLLANSASAILDKSGISQQEVNDLTAHLDTYLKKMNILPSEDISTVLNQVKSDGVKKLHVK---SREYVNSLIEFTDDFEFVNETGTVFNFGDTGGYASGSHTQITTLASDIVKNQSQSFDVADASQIQK-GDGSVSGNFGRAYDNYLTSENIVILKVNPINKTVSTDNNPNVPLVIDYARNFETGYFENKGGKFAGLRLRRCFNFNIAINSAKNNA---------------------------PANTLNYGIQISNCQNYNYFGGSNNSTRHAVAIGGDGDPCRNGYVSGAILHSETDTS-GADMHGNVERTVYDHCTTNYATFGAGDGCVLIAEPRGGEFKLTVKLDGGCINGVASAGIVTIRQSNALNEALTKKVNVHITGGVSCDFDALRHWAWVEDGTIGRYTVPIGYIIVDDVVNTKDTANPYLIYPSQSTLATNVKTRQM---------LQQGVVSVTSAVNNTATRANVINLKYKYSKAPNVI..... 557
30 -14.7001ee6_A mol:protein length:197 PECTATE LYASE  ali model follow..  14  7................................................................................................................................................................ETIRVPAGQTFDGKGQTYV--------------ANPNTLGDGSQAENQKPIFRLEAGASLKNVVIGAPAADGVHCYG--DCTITNV---------------------------------WEDVGEDALTLKSSGTVNISGGAAYKAYDKVFQINA----AGTINIRNFRADDIGKLVRQ---GGTTVMNVENCNISRV----KDAILRTDSSTSTGRIVNTRYSNV................................................................................................................................................. 177
31 -14.2005m5z_A mol:protein length:757 Beta-1,3-glucanase  ali model follow..  10  29..........................................................RNVKDYGAVGDGVTDDTAAINAAISDGNRCGQGCSSQTTTPALVYFPGTYLVSK--PIISYYYTQLVGDAISP--------------------PTLKAAANFEGMAVIDADPYDENGNNWWTNQNNFFR--------------------------QVRNFVIDLTAMPFEVGSGIHWQVAQATSLQNIVFNMRT-------------------------DGGDDNRQQGIFMDNGSGGLMVDLVFNGGRYGAFFGNQQFTTRNLTFNNCKT----AIFMNWNWAWTFQDVKINNCEV---------GIDMSNGGPDGQTVGSVLLLDSHITNTGIGIKTAYDPAQPHTNGTLILDNVEMTGTPIAVQNDATGTTIVDGNQKIAFFAQGRTYGGSIGGTSGKAVQTTEQAIVKPNVLLDPATGKVFTRSRPQYEDVPVSSFVSVKANGAKGDGVTDDTDAIQAIFDSVTPEQIV 416
32 -13.1004rmx_A mol:protein length:626 Phi92_gp150  ali model follow..  11...............LFAFIGKTTASTSYVEKNLLSSTTGAAMVGLPSGGNLLQAQYFVTPEQFGAIGDGVTDDTQAILKTITFANTNNIQVRA-----DKNYRFTSSIAMSGVRW---YGGTFTGNGG-------TMISTVSCWMENVRFEKCYVKMLGGDCRFYR--IFSNATSTAAFLMQAMTSEGTLDFSYNEMYGCK----------EVMTYGRYSNNYIHDIKGDAIELNVVQKHYTEGLIIENNHI------ANVDASGQGANWGIGIGVAGSGPYGVDVPDSQYVRNFSIVGNRVYNCRQCLHVEMG----KNFTIRDNEVYPGTGLTTCGVALYGCQDFEVDGLTGYLLNDPSVSMVFIDWGVNNGGPPINFTIKNLDIPESSIEIAT--------SGSDAWENSTIVSNINCNVFKWRGLPS----------SSTFNNIRCRSIDFIGQ........................................................................ 420
33 -13.0003eqn_A mol:protein length:758 Glucan 1,3-beta-glucosidase  ali model follow..  13  2..........AEAEFLGSTCSSPLTHGSAAPGDPFWLQNIQHQGIAAFNGNPGGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGPALVYFP---PGTYVSSPLVVLYQTQLI-KNLPTLLAAPNFSGIALIDADPYLAGGAQYYVNQN--FFRSVRNFVILRQVSGSATG----------------------------------IHWQVSQATSLINIVFQGNQHQGIFMENGSGGFLGDLVFNG---------------------------------GNIGATFGNQQFTVRNLTFNNANTAINAIWNWGWTFQRITINNCQV----GFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQTFVRWSGASSGHLQGSLVLNNIQLTNVPVAV........................................................................................................................................ 329
34 -12.1005js4_A mol:protein length:719 phiAB6 tailspike  ali model follow..  10  232....................................................VINGNLITVDNFGAKGDGVTDDSAAFQAYCDSALTGQNLYLG----AKGRYLKNQVDLKG------------------------------------------------KGLVGNGCGKV-----------------------------------------EFYYNLGCIDVDGSSPDLQGKTAFINCGPTIQNLTARC---------------------------SNGAGKQVSFIEIDG-YLANIDHITLINFYNQIVVKQA---LVGFNFTNAWLSQNAGIYCEDPLNRVSTTGTFHNIYFQLGD---GHAMIF------DRDVHGCDFDNIIFESMNGGIKAR------------TVAHCGFGKFWCENLKTATSK.................................................................................................... 469
35 -11.8005gkd_A mol:protein length:726 AlyGC  ali model follow..  1...................................................................ADLLVKTPEAYDQALKKAKPGDDIIL-----ANGTW--------RDFEVLFEAKGNENKP--------------------------TLRGQTPGKVFLTGQSNLRLAG----------------------------------------EHLIVSGLVFKDGYT-----VLASHSRVTQVVIDN-NPEKFEQDSWVMVYGRHNRFDHNHLVGKRNKGVTMAVRLTTENHHRIDHNYFSNGGETLRIGTSHHSDSFTLVENNYFDRGEVEIISNKSGKNSNGNIVENNVFFGNGVDHTGGIRVI---NRDQIIRNNYLEGLTGYRFGSGLTVMNGVPNSKINRYHQVDNALIEN----NTLVNVEHIQFAAGSDKERSAAPINSNMNNNLIVNDQGTDGIT................................................................. 356
36 -10.7003zsc_A mol:protein length:340 PECTATE TRISACCHARIDE-LYASE  ali model follow..  13  18......................................................................................................................................................................PEGTVGGLGGEIVFVRTAEE------------EKYTTAEGKYVIVVDGTSDKTIVGINDAKIVGGGLVIKDAQNVIIRNIHFEGFYMEDD---------------------PRGKKYDFDYINVENSHHIWIDHITFVNGDGAVDIKKY---SNYITVSWNKFVDGSSDKEDPEQAGQAYKVTYHHNYFKNLIQ--------RMPRIRFGMAH--VFNNF................................................................................................................................................. 212
37 -10.6006fi2_A mol:protein length:408 VexL  ali model follow..  11  1MRLRKTVMVWLLTLTGLYGGAAAASGQCAAPDEHCPFSLLAQREGYGAKATGGLGGKFIEVTSDQDAGPG------TLRAALAQARKGPAWIRFA--------SDMTIVLKTQLRVP-------------------------------------------SNTTIDGRGALIDDG----------------------------------LGVYGAKNVILTHLTIDGR---------------------------------------------------LTRLTQAVNVANDSRDVWVDHMDLSRMDRLLNVKNG---STDVTISWTKFHNSNKVMLQNYERDSIARVTLHHNYFFNTVQRNPR-AQFGTFHLFNNLLENWDFYGMSFSLEAKALVEGNIFNNDAQR............................................................................................................................ 277
38 -10.6001dbg_A mol:protein length:506 CHONDROITINASE B  ali model follow..  11  1MKMLNKLAGYLLPIMVLLNVAPCLGQVVA--------------------------------------------SNETLYQVVKEVKPGGLVQI-----ADGTYKDVQLIVSNS-----KSGLPIT-----------------------------IKALNPGKVFFTGDAKVELRGEHL----------EGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGYYRNDIGRCLVDSNLFMRQDSEAEIITSK--SQENVYYGNTYLNCQG---TMNFRHGDHQVAINNFYIGNDQRFGYGGMFV---WGSRHVIACNYFELSETIKSRGNAALYLN-PGAMASEHALAFDMLIANNAFINVNGYDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPY..................................................................... 394
39 -10.0001air_A mol:protein length:353 PECTATE LYASE C  ali model follow..  13  1............................................................................................................................................................ATDTGGYAATAGGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLIKGITIIGANG--IWIKKSSDVVVQNMRIGY---------------------------LPGGAKDGDMIRVDDSPNVWVDHNELFAAESAVDIKGA---SNTVTVSYNYIHGVKKVGLGSSSSDTGRNITYHHNYYNDVNARLPL-QRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKGNNITKPADFSTYSITWTADTK-------------------PYVNADSWTSTGTFPTVAYNYSPVSAQCVKDKLPGYAGVGKNLATLTSTACK............... 353
40 -9.9202qx3_A mol:protein length:330 Pectate lyase II  ali model follow..  11  5...............................................................YGAATTGNVATFEAMQSAIDSYSGSGGLVLN---------YTGKFDFGTIKDVC----------------------------------AQWKLPAKTVQIKNKSDVTIKGAN----------------------------------------GSAANFGIRVVGN---------AHNVIIQNMTIGLLQGG-----------------------EDADSISLEGNSSGEPSKIWVDHNTVFASDGGIDMKKG---VHHVTVSYNYVYNYQKVALDSDTKNSAARTTYHHNRFENVESRVPL-QRRGLSHIYNNYFNNVTTSGINVRMGGIAKIESNYFENIKNPVTSRDSS..................................................................................................................... 259
41 -9.7701pxz_A mol:protein length:346 Major pollen allergen Jun a 1  ali model follow..  24...................................................................................................................................................................CAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHK-CLFMRKVSHVILHSLHIHGCN----------TSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCDGLIDVTLG---STGITISNNHFFNHLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR-ARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTK..................................................................................................................... 281
42 -9.6303vst_A mol:protein length:638 Xylosidase  ali model follow..  2.........................................................EYHVAKTGSDEGKGTLKDLTINKAASVAMAGDTIIV-----HEGVY-KRRITYKA------GEKVVIKGSERIQSWQRVEGNVWRCQRTEVLDHWTQKIVPIKNAEQTKYVWYAEVDREKTTIYANFQGADP-----NEEFVEINVRRSCFYPVETGIDYITVKGFEMAHAAT--IGPNWSKGWIIEDNIIHDAKCS-EATTGNNYRSIRKDKPGYQYQLEAVFNAKRNGWSKEKIGSHIIRNNTIDCGQNAIVGHLG---GVFSEIYNNHIYNIAGHEIAGIKLHAAIDVQIHHNRIHDC----SLGLWLDWEAQGTRVSKNLFYNNVFVEVSHGPYLVDHN................................................................................................................................... 416
43 -9.3905g5o_A mol:protein length:373 LH3 HEXON-INTERLACING CAPSID PROTEIN  ali model follow..  1.............................................MTSVEDLYVVKPINQWPAPSGLPVPSPPGTLLPGQSPDEAFARNSVVFLVP---GAEYNWKNVVIRKPVWI-YGNGATVKTSGL------------------GPIIHIMGDLDNPMDVRIQD--TFIGGDSP------------------DRLVPFSAVLTNQMALWCIDPRITIRGCSFYNFGGAAIYLERSGQVMITDCRFRG---------------------------------CRIGIANGSVEYGLASQNNFSDCQICFNVVGG-----NWTRSGNVASNCRCMYLGAAGNFNPAHGSFTSNTLNHCDYGGNLWPTEFQLPDRVINLAGFYFDNAAARLPN-----SQWYGDMKLINFLPDSTFVINGGALYGGPGDTAAKVFVIGCQGNAGQQIVNVPAANI............................................................................. 357
44 -9.3701ru4_A mol:protein length:400 Pectate lyase  ali model follow..  11  1..........................................ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNMSFSAAMAAVNPGELILL-----KPGTY-TIPYTQGKGNTITFNKSGK----------------------------GAPIYVAAANC----GRAVFDFSF------------------------PDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAY-VIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGPKQKQGPGNRFVGCRAENSDDGFDLFDS---PQKVVIENSWAGNGNGFKLGG--NQAVGNHRITRSVAFG---NVSKGFDQNNNAGGVTVINNTSYKN.................................................................................................................................................. 292
45 -9.3705gt5_A mol:protein length:446 Pectate lyase  ali model follow..  2.....................................................AGNADYNLTGFSQGNTGGGVISESNTAVYKKVYNATDLALKKNSGVKVVEIMNDLNLGWNEIPSAAQTSPFAKHNDAL-------------------THPVLKQTGVSKITVDGFNLTIFSA----------------------------------------NGSKIKH---------AISVKRSSNVIIRNLEFDE---------------------WDESTKGDYDKNDWDYITLEESSGVWIDHCVFNAYDGLVDSKKG---TSGVTISWSTFKGWVTRQINEMEANKASYPMYNYLRSSAVGLSKEDIIAISGSQKKGHLVGA---TSDESANANLSITLHHNVYKDIQDRMPRLRGGNAHAYNIIMDATDARAAQTRITSGMAAAIASKGYKFGITS............................................................................ 323
46 -9.2905olq_A mol:protein length:522 Rhamnogalacturonan lyase  ali model follow..  2.......................................................GKTYYMDPEGSDSNPGTSDKATLVKVQEVVVAGDVVYI-----NPGTYVVPANQVLYHCVFHMNKSGEAGKPISYLANPNKQGR--DLSQVKPKDQRITVFYVTGSNLYLKG------------------------DVIGTQVTITGHTQSECFRIVKGANNNKFEDLRTHDGMAIGFYLLGGSNNHILNCDAYN------------NYDSVSEGGKGGNVDGFGGHINSSSVGEGKGTGNVFEGCRAYNSDDGFDLINC---FEAVKIINCWSGYGMAADKLPAIPSVIPQHEVRNSLAYY---NRLRGFYANHHLGGIIFESNTAVNS.................................................................................................................................................. 319

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 6 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.