FFAS03 results for COG5505

Query: [S] COG5505 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 .
#	Score	Template	Links and tools	%id	First	`MHSLISSDDVWVLWGFIAVWAAVSIGLEQRFKWASAVSGAIIALAGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHIPYLDKIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIPALKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERLNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAMAIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGNWFSSFL`	Last
1	-12.400	`5a1s_A mol:protein length:448 CITRATE-SODIUM SYMPORTER`	`ali model follow..`	12	48	`......PTDLVGGFALMFVMGAIFGEIGKRLPIFNKYGAPVMIFLVAAYFVYAGIFTQKE---SNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIPVDRI--VLPIMGGGNGAGAVPLSEIHSVTGRSREEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGELVRKASFKTEDDEK---AGQITHRETAVGMVLSTTCFLLAYVVAKKI---LPSIGGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSFSKQLLWVLMVGVGCYTDLQEIIDATFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAMANRGGSGDLEVLSAC-NRMNLISYAQISSRLGGGIVLVIASIVFSMM....`	445
2	-12.300	`5x9r_A mol:protein length:438 Citrate-sodium symporter`	`ali model follow..`	12	38	`......PTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYGAPVMIFLVAAYFVYAGIFTQKE---SNFLNLFIAVLITGAILSVNRRLLLKSLLGYIPTILMGIVGASIFGIAIGLVFGIPVDRI--VLPIMGGGNGAGAVPLSEIHSVTGRSREEYYSTAIAILTIANIFAIVFAAVLDIIGKKHTWLSGEGELVRKASFKVEEDEK---TGQITHRETAVGLVLSTTCFLLAYVVAKKI---LPSIGGVAIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSFSKQLLWVLMVGVGCYTDLQEIINATFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAMANRGGSGDLEVLSAC-NRMNLISYAQISSRLG---GGIVLVIASIVFGMMI`	436
3	-9.830	`4bwz_A mol:protein length:394 NA(+)/H(+) ANTIPORTER`	`ali model follow..`	10	10	`.............IFYLLLAAQVCAFIFKRLNQPVVIGEVLAGVLVG---ALLGLVHEGEIL-----EFLAELGAVFLLFMVGLERLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIG------FETLPALFLGTALVATSVGITARV-SRIILGAAVIDDVLGLIVLACVNGVAE-------------------------------TGQVEVGAITRLIVLSVVFVGLAVFLSTLIARLPLERLPVGSPLGFALALGVGMAALAASI---LAPIVGAFLGGMFLAPIFFAMVGVRLELSALASPVVLVAGTVVTVIAILGKVLGGFLGALTQGVRSALTVGCGMAPRGEVGLIVAALGLKAGAVNEEEYAIVLFMVVFTTL............`	365
4	-9.540	`5bz2_A mol:protein length:386 Na(+)/H(+) antiporter`	`ali model follow..`	10	10	`.............IFYLLLAAQVMAFIFKRLNQPCVIGEVLAGVLVG---ALLGLVHEGEIL-----EFLAELGAVFLLFMVGLERLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIG------FETLPALFLGTALVATSVGCTARV-SRIILGAAVIDDVLGLIVLAVVNGVAE-------------------------------TGQVEVGAITRLIVLSVVFVGLAVFLSTLIARLPLERLPVGSPLGFALALGVGMAALAASI---LAPIVGAFLGGMFLAPIFFAMVGVRLELSALASPVVLVAGTVVTVIAILGKVLGGFLGALTQGVRSALTVGVGMAPRGEVGLIVAALGLKAGAVNEEEYAIVLFMVVFTTL............`	365
5	-7.860	`4czb_A mol:protein length:426 NA(+)/H(+) ANTIPORTER 1`	`ali model follow..`	10	1	`....MELMMAIGYLGLALVLGSLVAKIAEKLK----IPDIPLLLLLGLIIGPFLQIIPSDSAMEIF-EYAGPIGLIFILLGGAFTRISLLKRVIKTVVRLDTITFLITLLISGFIFNMVLNLPYTSPGYLFGAITAATATLIPVFSRVRTNPEVAITLIFNDPLGIVSTSVILGLFGL---------------------------------FSSSNPLIDLITLAGGAIVVGLLLAKIYEKIIIHCDFHEYVAPLVLGGAMLLLYVGDDLLPSICGYGFSGYMAVAIM-FIFVFLGACIKLSMLENYFIPGLLVALGSIFLARPLGVFLGLISKHSFKEKLYFALEGPRGVVPAALAV......................................`	356
6	-6.220	`4n7x_A mol:protein length:312 Transporter, sodium/bile acid symporter family`	`ali model follow..`	11	5	`...............................HMLVKITRLFPVWALLLSVAAY-FRPTTFTGIGPYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFRMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVALSVTISAVSTLVGVFATPLLTRL-------------------------------------------------------------YVDATISVDVVGMLKSILQIVVIPITAGLVITFTKTVKRIEPYLPAMSMVCILAIISAVVAGSQSHIASVGFVVIIAVILHNGIGLLSGYWGGKLFGFD-TCRTLAIAVGMQNSGLAATLGKIYFSPLAALPGALFSVWHNLSGSLLA...........`	299
7	-5.910	`4a53_A mol:protein length:125 EDC3`	`ali model follow..`	15	1	`.....................................................................................................................................................................................................................................................................................................................................................................................GAMGMSVADFYGSNVEVLLN...`	20
8	-5.670	`4cz8_A mol:protein length:422 NA+/H+ ANTIPORTER, PUTATIVE`	`ali model follow..`	11	1	`....MIELSLAEALFLILFTGVISMLISRRTG----ISYVPIFILTGLVIGPLLKLIPRDLAH-EIFDFVRVFGLVIILFTEGHNSWRLLKKNMPTIVTLDTIGLILTALIAGFIFKVVFNSSF-LLGFLFGAIIGATATLIPLFRQYRVKQDIETVIIFNDPLGIVLTLIAISMLVP-------------------GYGGGIFSTLSEKLGIYAGGVIYFLYNVSVSISLGIFLGILGYKFIKRTGIFDFPEIEAFSLSLAFLGFFIGERLDASGYLVATVTGIVL-IFIFVLLGAEMNLEVIWSNLGKGLLVALGVMILARPLATLPL-LKWWNFREYLFIALEGPRGVVPSALASLTVHWGEIIMATVVITVLTSVI----TLWIPILKDKL.`	419
9	-5.530	`3zux_A mol:protein length:332 TRANSPORTER`	`ali model follow..`	12	11	`...............................KISSFIGKTFSLWAALFAAAAF-FAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLM-------------------------------------------------------------LAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLP-AQKALTIEVGMQNSGLAAALAAAHAAPVVAVPGALFSVWHNISGSLLA...........`	307
10	-5.480	`4u4t_A mol:protein length:475 Nitrate/nitrite transporter NarK`	`ali model follow..`	13	83	`....................................VSGALLRVPYSFMVPIFG---------RWTAFSTGILIIPCVWLGAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGL-MGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFSFIGFSAGFAMLSKTQFPDVQI-----LQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQM-ISVIFRKLTMDRVKAEGGSDERAMREAATDT--AAALGFIS-AIGAIGGFFIPKAFGSSL`	429

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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