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Query: [O] COG5596 Mitochondrial import inner membrane translocase, subunit TIM22, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLSGLLPPNLGGNSPNADGNLTPEEKAALQQAKIIGYMNRISESCVFKSSMAGVLGFGLGGIFGMFISSLDLQHIDPKIYEKPFREQIRIQARDMGSRSFSTAKNFGLLGLIYSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSGPKAIVLGGAGFGLFSYGIEKYMHWGELast
1 -37.6006gcs_J mol:protein length:198 NUJM SUBUNIT  ali model follow..  12  1.........................MSEHVHLPSPTFNTSSAGHFHPYNTLGLATQSAMVGLGAGVVAAAAR-----------NSLATGPRNILTTFSKSGGVVTIFTGASIAYVFTYCSAANLRERKDGWNHMWAGAATGAVLGARTKVPAFIGWTVLCGAACGLFGWTGARFN 140
2 -37.3005gup_V mol:protein length:141 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11  ali model follow..  18  16...........................................TECHRKAYASTSIGGATGLIVSAYSIALKP----------------PASFLEGVARTGRYTFTSAAIGAIFGLTSCISAQVREKDDPLNYFIGGCAGGLTLGARTRYGIGAAACAYMGLTAALVKMGQLEG. 132
3 -36.8006g2j_Y mol:protein length:143 MCG5603  ali model follow..  17  18...........................................TQCHRKTYITTALGGICGIIGSAYSVSLNP----------------ADSTLEAVARVGRYTFTAAAIGAMFGLTTCVSAQVREKDDPLNYFIGGCAGGLTLGATHSYGTAAMGCVYMGTAAALFKIGKLEG. 134
4 -36.1005ldw_Y mol:protein length:141 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11  ali model follow..  17  16...........................................TECHRKTYATTSIGGAAGLVVSAYSVALKT----------------PTSFLEGVARTGRYTFTAAAIGAIFGLTSCISAQVREKDDPLNYLIGGCAGGLILGARTRYGIGAAACAYMGLTAALVKMGQLEG. 132
5 -35.9005xtc_V mol:protein length:140 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11  ali model follow..  14  15...........................................TDCHRKAYSTTSIASVAGLTAAAYRVTLNP----------------PGTFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKDDPLNYFLGGCAGGLTLGARTHYGIGAAACVYFGIAASLVKMGRLEG. 131
6 -7.7105sv0_B mol:protein length:244 Biopolymer transport protein ExbB  ali model follow..  13  131..............................................................................................GYLATIGAISPFVGLFGTVWGIMN-SFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLG 210
7 -7.0906caa_A mol:protein length:1035 Electrogenic sodium bicarbonate cotransporter 1  ali model follow..  12  400.........................................................................................GGLIKDIKRKAPFFASDFAILFIYLATVTNAIDATDNMQGVLESFLGTAVSGAIFCLFAGQPLTILSSTGVLVFERLLFNFSKDNN 503
8 -6.9305l25_A mol:protein length:652 Boron transporter 1  ali model follow..  10  9.........................................................................................EGIKNDLKGRLMCYKQDWPTTYIFFASAIPVIRSTDGVLTAVQTLASTAICGMIHSIIGGQPLLILGVAETVIMYTFMFNFAKARP 114
9 -6.8502xq2_A mol:protein length:593 SODIUM/GLUCOSE COTRANSPORTER  ali model follow..  14  348....................................................VGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAAIGQCFQYIQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFL........ 470
10 -6.7503h04_A mol:protein length:275 uncharacterized protein  ali model follow..  15  37............................................................GG--GLMFGK---------------ANDLSPQYIDILTEH------YDLIQLSYEDVYASFDAIQSQYSNCPIFTFGRSSGAYLSLLIARDRDIDG................... 121
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.