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Query: [S] COG5650 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDQKLDQQKVDRVSPGDSEPVARDFINAIGGRFGRFAQVGTQRFWTPLRVLITTSLVFLAMGFLTKANCIQGSRGTDGVVSLNWSGSRQYTSACYNDIVPLYGGRGIDAPGFPYAFSWQEGDLTRYMEYPVLGGIFQWICGIITRFLYPVVDVIPFHTLPESGLYFIVTALALAFFWVLVIRMMVELTGNRVWDTVLVAASPLVAVHAFTNWDTPAIAAVIGAMLAVKRGNPLVAGVLIGAGTAFKLWPLYLLGAYLVLAVKNKNLKPFITMAAAAAVTWLVVNVPVMIAYPKAWNEFLRLNRERGAEWTTIYQVIDRNLPINLNDPVLLNVLSFGLFGASCVAILILGLKVQRTPRVAELAFLIVAAFLLFNKVWSPQYSLWLVPLAVLAFPQWKVLFPWMVTDAMVWPILMWHMLGTDNKGLPHEMLDLIVISRDAFIVVMIVGVIRQMLGRRADPVMDAHAGRDLLAGPFGAGERRKALKEVSLast
1 -14.9005ezm_A mol:protein length:578 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family  ali model follow..  11  1..........SYVMPQPTSQQRASVASSQSTQGAVGWSAATGWV-----VLFVAVALVVWFVSLDMRHLVGPDEGR------------------YAEISREMFASG----VTIRYNA------LKYFEKPPFHMWVTVVGYELFGL-----------EWQARLAVALSGLLGIGVSMMAARRWFGARAAAFT-GLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMRRGWMVACWAAMGVAILTKGLVGIALPVLVVYTLVTRDWGLWRRLLALGVVVMLVITVPWFYLNPEFPNFFFRYTSNIHSRSGSVFYFLPLV---------IGGFLPWAGIFPKLWTAMRAPVEGTQARFMAGIWAIAIFVFFSISRSKLPGYIVPVIPALGILAGVA........................................................................................... 363
2 -12.3006ftg_5 mol:protein length:705 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A  ali model follow..  7  18.................................................LKLLILSMAAVLSFSTRLFAVLRFE----------HEFDPYFNYRTTRFL-------AEEGFYKFHN-------DDRAWYP----PGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLTKELKDAGAG--LLAAAMIAVVPGYIVAGSYDNEGIAIFCMLLTYYMWIKAWAAKCALAYFYMVSSVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALLMLTGKIS-LLVFMFPVGLYYCFSNLSDARIFIYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLST................................................................... 428
3 -11.8006c26_A mol:protein length:718 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  7  1................................MGSDRSCVLSVFQTILKLVIFVAIFGAAI-SSRLFAVIKFES----------HEFDPWFNYRATKYL-------VNNSFYKFLN-------DDRTWYPTLYPGLMTTSAFIWHALRNWLGLPIDIRNVCVLFAPLFSGVTAWATYEFTKEIKDASAG--LLAAGFIAIVPGYISRSVAGSEAIAITLLMVTFMFWIKAHATCAALFYFYMVSYVFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAIGTVASMQIPFVGFLPIRSNDHMAALGVFGLIQIVAFGDFVKGQISTAKFKVIMMVSLFLILVLGVVGLSALTYMGLIAPFLIWLFPAGVFLLFLDLKDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVAL....................................................................... 421
4 -9.6903waj_A mol:protein length:875 Transmembrane oligosaccharyl transferase  ali model follow..  12  7...........................................WFKKYWHLSVLVIAALISVKLRILNPWNSVFTWTVRL----GGNDPWYYYRLIENTI--------------HNFPHRIWFDPFTYYPPFLVYLGSIAGIIFSATSGESLRAVLAFIPA-----IGGVLAILPVYLLTREVFDKRAAVIAAFLIAIVPGQFLQRSILGFNDIWEAFWQVSALGTFLLA-PVIAGITIGLYVLS-IILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPRVGLGRKGMPLAVIVLTALIMGLFFVISPDFARNLLFFFGMAGILYSAYRFLKRRSFPEMALLIWAIAMFIALWGQNRFAYYFAAVSAVY............................................................................................... 438
5 -8.1605wb2_A mol:protein length:460 Envelope protein US28, nanobody 7 fusion protein  ali model follow..  9  1..............................................................................................YKDDDDAMTPTTTTAELTTEFDYDEDATPCVFTDVLNQSKPVTLFLYGVVFLFGSIGNFLVIFTITWRRRIQCSGDVYFINLAAA--------------DLLFVCTLPLWMQYLLDHNSLASVPCTLLTACFYVA---MFASLCFITEIALDRYYAIVYMR-------YRPVKQACLFSIFWWIFAVIIAIPHFMVVTKKDNQCMTDYDYLEVSYPIILNVELMLGAFVI--------LSVISYCYYRISRIVAVSQSRHKGRIVRVLIAVVLVFIIF---WLPYHLTLFVDTLK................................................................................................. 261
6 -8.1403rce_A mol:protein length:724 Oligosaccharide transferase to N-glycosylate proteins  ali model follow..  11  15.................................................YTCILILIAFAFSVLCRL------------YWVAWASEFYEFF--FNDQLMITTNDGYA-EGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSILP------------FSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYDMLVLVLPMLILLTFIINKDIFTLLLSPIFIMIYLW-MIGLFGLYTLVFHRKEKIFYLAIALMIIALSISISILHLSGGLDPVLYQLKFYVFKASDV-NVNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFILLCKDHKS-----MLLALPMLALGFMALRAGLRFTIYAVPVMALGF------------------YFLYAFFNFLEKKQIKLSLRNKNILLILIAFFSISPALMHIYYYKSSTV........................... 438
7 -8.0504dji_A mol:protein length:511 Probable glutamate/gamma-aminobutyrate antiporter  ali model follow..  9  2.......ATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIP----------------------------VGLCAAEMATVDGWEE--GGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAA-FVAFILSYMGVEASA-GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCA-------YFMLFIGYIVLVLKH-KLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYA..................................... 465
8 -7.7705ogl_A mol:protein length:713 Undecaprenyl-diphosphooligosaccharide--protein glycotransferase  ali model follow..  10  15.................................................YTAILILIAFAFSVLARLY----------------SEFYEFF---FNDQLMITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSILP-----------FSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYDMLVLVLPMLILLTFIINKDIFTLLLSPVFIMIYLW-AMIGLFGLYTLVFHRKEKIFYLTIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISILILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIVFILSFIGFILLLKDHKSMLLALPMLALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFLEKKQIKLSLRNKNILLILIAFFSI...................................... 423
9 -7.7405wpq_A mol:protein length:592 Mucolipin-1  ali model follow..  8  23..GTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKGRKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIALLGYSDGSDDTFAAYT-VDQYLILPEISLGRYAYVRGGGGPWANGS-PRVVTDCIQVDPPDRPPDIPSEDLDFLDGSASYKNLTLKFHKLINVTIHFQLKTINLQSLINNEIPDCYTFS--ILITFDNKAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLLFDVVVILTCSLSFLLCARS-SLWERLEFVNGWYILLVTSDVLTISGTVMKIGIEAKNL--------ASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVHVKFRSLSMVSECLFSLINGDDMFVTFAAM----------HSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSE................... 536
10 -7.6101uvg_A mol:protein length:78 SERINE PROTEINASE INHIBITOR KAZAL TYPE 5  ali model follow..  15  8.KDYRVLPRIGYLCPKDLKPVC--------GDDGQ-------TYNNPCMLCHENLIRQTNTHIRSTGKCEESS-----------TPGTTAASMPPSD..................................................................................................................................................................................................................................................................................................................................................................................................... 77
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;