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Query: [R] KOG1492 C3H1-type Zn-finger protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRPFKQSKFSLVWTQNDPQPRMPIAHMRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLNISRKLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSKKESEKQSGQNNTSTASRNHLAHGRMTLFPANLKFFIIDFWFSGERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGKGVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDEHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRSTDSEVFGMESLDFITLGTAEYEAGDDNDPATVQSISSDSESLISIYNLITPVALMHSRGFRFVTFKDEKSMKDVIEGLAGQELDGRSITVIMAQLRGSGRGSEDTAAVVAVTQEKVVVAMELVVVTQEEVVVAVEAKEDTAAVLAVTQEVVVVAAEAKEDTAAVLAVRRIWWWSRRKRRWRMVIPYWFCLIWVLCVVFGFTFATLDVTGRVIKFDIWKRNGKSLFLVLast
1 -35.3006eoj_B mol:protein length:208 mRNA 3`-end-processing protein YTH1  ali model follow..  20  21.............................................................................................................................................................................................................................................................QEYSFSLDPDRPICEFYNSRKSCPRGP-LCPKKHVLQNKIVCRHWLRGLCKKNDCEYLHEYNLRKMPECVFFSKGYCQSPDCQYLHIDPASKIPKCENYEMGFCPLGSSCPRRCQRYMTGFCPLGKDECDMEHPQFIIPDEGSKLRIKRDDEINTRKMDEEKERRLNAIINGE........................................................................................................................................................................................................................................ 207
2 -35.0006dnh_C mol:protein length:245 Cleavage and polyadenylation specificity factor subunit 4  ali model follow..  21  21.....................................................................................................................................................................................................................................................EQQLGAQPLPFPGMDKSGAAVCEFFLK-AACGKGG-MCPFRHISEKTVVCKHWLRGLCKKGDCEFLHEYDMTKMPECYFYSKFGESNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQRTPQVIGVMQSQNSSAGNRGPRPLEQ............................................................................................................................................................................................................................. 218
3 -24.2003u9g_A mol:protein length:229 Zinc finger CCCH-type antiviral protein 1  ali model follow..  18  1.......................................................................................................................................................................................................GPLGMADPGVCCFITKILCAHGGRMTLEELLGEIRLPEAQLYELLETAGPDRFVLLETGGQAGITRSVVATTRARVCRRKQRPCDSLH------LCKLNLLGRCHRNLCKYSHDVLSEQNFQKNHELSGLNQEELACLLVQSDPFFLPEIGEGRKQTCGQPQPCEHICEHFTR-GNCSYL-NCLRSHNLMDRKVLTIMREHGLSPDVVQN......................................................................................................................................................................................................................................................... 218
4 -20.7004yh8_A mol:protein length:216 Splicing factor U2AF 23 kDa subunit  ali model follow..  14  9.................................................................................................................................................................................................................................................................YGTEQDKVNCSFYYKIGACRHGE-RCSRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAVCDNVGDHLVGNVYVRFKYEESAQNADLNSRWYSQRPVYAELSEACCRQHET-SECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN............................................................................................................................................................................................................................... 216
5 -15.3002e5s_A mol:protein length:98 OTTHUMP00000018578  ali model follow..  23  8...........................................................................................................................................................................................................................................................STATQKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMI------------------DTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQAKIKAAQHQ................................................................................................................................................................................................................................................................................................................ 91
6 -14.6005u6h_A mol:protein length:92 Muscleblind-like protein 1  ali model follow..  23  9................................................................................................................................................................................................................................................................RDTKWLTLEVCREFQR-GTCSRPDTECKFAHPSKSCQV--------------------ENGRVIACFDSLKGRCSRENCKYLHPPPHLKTQLEI---NGRNNLIQQKN...................................................................................................................................................................................................................................................................................................... 92
7 -14.4002d9n_A mol:protein length:77 Cleavage and polyadenylation specificity factor, 30 kDa subunit  ali model follow..  25  2...........................................................................................................................................................................................................................................................................................SSGSSGEKTVVCKHWLRGLCKKGDCEFLHEYDMTKMPECYFYSKFGESNKECPFLHIDPESKIKDCPWSGPS............................................................................................................................................................................................................................................................................................................... 75
8 -14.1002cqe_A mol:protein length:98 KIAA1064 protein  ali model follow..  20  5......................................................................................................................................................................................................................................................................................................................SSGELPKKRELCKFYITGFCRAENCPYMH------------------------DFPCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKSGPS.......................................................................................................................................................................................................................................... 96
9 -13.2003d2n_A mol:protein length:83 Muscleblind-like protein 1  ali model follow..  25  1...............................................................................................................................................................................................................................................................SRDTKWLTLEVCREFQR-GTCSRPDTECKFAHPSKSCQV--------------------ENGRVIACFDSLKGRCSRENCKYLHPPPHLKTQLEI.................................................................................................................................................................................................................................................................................................................... 74
10 -12.8002rpp_A mol:protein length:89 Muscleblind-like protein 2  ali model follow..  25  1.......................................................................................................................................................................................................................................................GSSGSSGPVRDTKWLTLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV--------------------ENGRVIACFDSLKGRCSRENCKYLHPPTHLKTQLEI.................................................................................................................................................................................................................................................................................................................... 82
11 -12.8005elk_A mol:protein length:133 RING finger protein unkempt homolog  ali model follow..  21  15......................................................................................................................................................................................................................................................................KTEPCKKPP--RLCRQGY-ACPYYHNSKDRRRSPRKHK----------------YRSSPCPNVKHGKCNGDACQYCHTRTEQQFHPEIY------------STKCNDMQQAGSCPRGPFCAFAHIEPPPLSDDVQPSSAVS............................................................................................................................................................................................................................................................... 133
12 -12.7005u6l_A mol:protein length:83 Muscleblind-like protein 1  ali model follow..  25  9......................................................................................................................................................................................................................................................................RLEVCREYQR-GNCNRGENDCRFAHPADSTMI------------------DTNDNTVTVCMDYIKGRCSREKCKYFH............................................................................................................................................................................................................................................................................................................................... 66
13 -12.1002lhn_A mol:protein length:80 Nuclear polyadenylated RNA-binding protein NAB2  ali model follow..  28  4..................................................................................................................................................................................................................................................................GSEKSLEQCKFGTH---CTN--KRCKYRHARSHIM-CREG--ANCTRIDCLFGH----PINEDCRFGVN--CKNIYCLFRHPPGRVLPE....................................................................................................................................................................................................................................................................................................................... 78
14 -12.0002rhk_C mol:protein length:72 Cleavage and polyadenylation specificity factor subunit 4  ali model follow..  29  2............................................................................................................................................................................................................................................................................................GSHMSGKTVVCKHWLRGLCKKGDCEFLHEYDMTKMSECYFYSKFECSNKECPFLHIDPESKI........................................................................................................................................................................................................................................................................................................................ 66
15 -11.8003d2q_A mol:protein length:70 Muscleblind-like protein 1  ali model follow..  24  5......................................................................................................................................................................................................................................................................RLEVCREYQR-GNCNRGENDCRFAHPADSTMI------------------DTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQAK....................................................................................................................................................................................................................................................................................................................... 70
16 -11.3005elh_A mol:protein length:145 RING finger protein unkempt homolog  ali model follow..  11  12......................................................................................................................................................................................................................................................................RTEQCPLFVQHKCTQHRPYTCFHWHFVNQRR----------RRSIRRRDGTFNYSPDVYCTKYDEGLCPEGDLHRTTGDTE-KTGICIHETD----------------SKGNCTKNGLHCAFAHGPHDLRSPVYDIRELQAMEALQN......................................................................................................................................................................................................................................................... 145
17 -10.7004lj0_A mol:protein length:66 Nab2  ali model follow..  24  1......................................................................................................................................................................................................................................................................SEQDCKYW---PNCA--NPLCAFRHPTMP--PCRNGGE--CKVPGCKFTH-----LKTPCKF---RPCTNRSCPFLHEEGQRG......................................................................................................................................................................................................................................................................................................................... 66
18 -9.6606cmx_A mol:protein length:1999 Teneurin-2  ali model follow..  7  4..........................................................................................................................................................................................................................................................................T---YKLVIVLNG--TT----------FTYTTEAVDATAEKVF----------KQYA---DAGVDGEEAS-ENLYFQSGSTSCAD---NK--DNEGDGLDCPDCCLQSACQNSLLCR---------------------------------GSRDPLDIIQQGQTDWPAVKSFYDRIKLLAGKDSTHIIPGENPFNSSLVSLIRGQVVTTDGTPLVGVNVSFVKYPKYGYTITRQDGTFDLIANGGASLTERAPFMSQERTVWLPWNSFYAMDTLVMKTEENSIPSCDLSGFVRPDPIIISSPLSTFFSAAPGQNPIVPETQVLHEEIELSNVKLR-YLSSRTAGYKSLVPLNLIRVHL----------MVAVEGHLFQFQIW--DKTDAY.. 356
19 -9.6104u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  10  1..........................................................................................................................................................................................................................................................................................................................................................................................................ASAALEVLFQGPGMMAKNNKTTEAKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDPNIYSKYADGSDRIIKPEI-------------------------------NPVYDSDDSDAETQNTIGNIPLSAY-----------MPH-----------IGY-----DINGKRIQLEGWTNSGSSLNL. 229
20 -9.3404k0v_A mol:protein length:529 TEK tyrosine kinase variant  ali model follow..  25  199.......................................................................................................................................................................................................................................................................NHLCTACMNNGVCHEDTGEC----------ICPPGFMGTCEK-ACE-LHTFGRTCKERCS---QEGCKSYVC-----LPDPYGCSCATGWKG-CNEGPDCKLRCS-------CNNGEMCD................................................................................................................................................................................................................................................................................... 302
21 -9.1403zj1_A mol:protein length:83 NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2  ali model follow..  21  1...............................................................................................................................................................................................................................................................GSFTPTKKEGRCRLF---PHCPLGR-SCPHAHPTK------------------------------VCNEYPNCPKPPGTCEFLHPNEDEEL........................................................................................................................................................................................................................................................................................................................ 57
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.