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Query: [G] KOG1581 UDP-galactose transporter related protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAEPELVNGGVKENKLWKGVFAVSGIMSTLVIYGVLQEKIMRVPYGVNKEFFKHSLFLVFCNRLTTSAVSAGALLASKKVLDPVAPVYKYCLISVTNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGTLIMQKKYKGFDYLVAFLVTLGCSVFILFPAGDDVSPYNKGRENTVWGVSLMAGYLGFDGFTSTFQDKLFKGYNMEIHNQIFYTTLCSCVLSFTGLILQGHLLPAVDFVSLHRDCLLDIALLSTVATASQFFISYTIRTFGALTFAAIMTTRQLASIMLSCIWFSHPLSWEQCIGSVIVFGSLYAKNLLNNKKNSQTQPPPPELPQYEKVESSLast
1 -61.4005oge_A mol:protein length:337 GDP-mannose transporter 1  ali model follow..  12  4.LKTGHAGHNPWASVANSGPISILSYCGSSILMTVTNKFVVNL------KDFNMNFVMLFVQSLVCTITLIILRILAKFRSLNKTDAKNWFPISFLLVLMIYTSSKALQYLAVPIYTIFKNLTIILIAYGEVLFFGGSVTSMELSSFLLMVLSSVVATWGDQQAVAAGAAGAVASFNPGYFWMFTNCITSALFVLIMRKRIKLTNFKDFDTMFYNNVLALPILLLFSFCVEDWSSVNLTNNFSNDSLTAMIISGVASVGISYCSGWCVRVTSSTTYSMVGALNKLPIALSGLIFFDAPRNFLSILSIFIGFLSGIIYAVAKQKKQQAQPLRK............ 337
2 -57.0005y78_A mol:protein length:329 Putative hexose phosphate translocator  ali model follow..  12  3.PQKSSVGVSPTLVHTLKVGFYFFLWYFFNFIFNIANKRTLNM--------WKYPWVLSTIQLGVGALYCTFLWVLRTKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVFGAVGSALVLGEFFHPLTYLTLVPIVSGVALSAATELT-----------FTWTGFITAMISNVAFVTRNITSKFTMVDKTLIAQNTYALITIISFFMELPFALLMEGFPPLVSAIAGKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTPVTRLNFIGSTIAIIGTMLYSLAKAKLPSKREKQGTENLY....... 327
3 -30.1005i20_A mol:protein length:298 Uncharacterized protein  ali model follow..  13  9..................IGFTAILLWSTLALATSSTGAV--------------PFLLTALTFTIGGAVGIAAGLARGVGLSVLRQPWPVWVHGIGLFGYHFFYFSALKLAPPAEAGLVAYLWPLLIVLFSAFLPGERLRPAHVAGALMGLAGTVVLLGARAGGFGFAPE-----YVPGYLAAAACAVIWSVYSVASRRFARVPT----EVVAGFCLATAALSALCHILFEPSVWP-----VGSEWLAVVALGIGPVGIAFYTWDIGMKRGDVRLLGVLSYAAPVLSTLLLVVAGFAAPSGALAIACALIVGGAAVATLLARRLESSGENLYFQ.......... 298
4 -13.4002i68_A mol:protein length:137 Protein emrE  ali model follow..  6  6..............................................................YLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRSTPHEFEAYVEQ.......................................................................................................................................................................... 118
5 -6.7201whx_A mol:protein length:111 hypothetical protein RIKEN CDNA 1200009A02  ali model follow..  14  13.........................................................................................................................................................................................................................................................ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGIT-----AIVEFLEPLEARKAFRHLSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKA 104
6 -6.4604htt_A mol:protein length:418 Sec-independent protein translocase protein TatC, Lysozyme  ali model follow..  8  17......................................................................................IISIIAFLIGSGIAFYFAKYVFEILKEPILKSYPEVELITLSPTEPLFILIKIS---LAVGFIIASPVILYQF---RFIEPALYSHEKRAFIPLLLGSILLFMLGA------------------LFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKAGVITPEQLASFRKVIAFVIGAIIAPDVSTQVLMAIPLLLLYEISIFLGKLATRKKKEIGSGASMNIFEMLRID 254
7 -6.2903jbr_E mol:protein length:222 Voltage-dependent calcium channel gamma-1 subunit  ali model follow..  7  5.......................................................................................................................EAPKVRVTLFCILV------------GIVLAMTAVVSDHWAVLSPHMENHNTTCEAAHFGLWRICTKRIALGYFRHFNPGESSEIFEFTTQKEYSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLMFYVFAGLCLFVSLEVMRQSVKRMIDSEDTVWIEYYYSWSFACACAAF-----------VLLFLGGISLLLFSLPRMPQNPWESCMDAEPEH..... 222
8 -6.1502mql_A mol:protein length:105 Protein Hnrnpl  ali model follow..  7  16.........................................................................................................................................................................................................................................................VHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQ-----ALVEFEDVLGACNAVDNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS.... 105
9 -5.9604b4a_A mol:protein length:249 SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC  ali model follow..  8  15......................................................................................IISIIAFLIGSGIAFYFAKYVFEILKEPILKSYPEVELITLSPTEPLFILIKIS---LAVGFIIASPVILYQF---RFIEPALYSHEKRAFIPLLLGSILLFMLGA------------------LFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKAGVITPEQLASFRKVIAFVIGAIIAPDVSTQVLMAIPLLLLYEISIFLGKLATRKKKEIQKAPGSENLYFQ... 249
10 -5.7405wuf_A mol:protein length:249 Putative membrane protein  ali model follow..  16  4................................................................................................................................................FLFYLDIFGVIVFALSGALMAGRYQ-----LDPFGVVVLASVTAVGG--GTIRDVILQTPVFWVEKPYYLYVILATAILTIVLIRQPKRIPKRFLLIADALGLALFAVLGTQKALYLGAPIPVAVVLGTITGIAGGMIRDVLCNVIPMILREEIYALAAMLGGSLFII................................ 164
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.