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Query: [A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVRRLKVNELREELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTLast
1 -53.8004xw3_A mol:protein length:221 ATP-dependent RNA helicase DDX1  ali model follow..  27  2..............................................................................................................................................................................................SQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE----WHGCRATKGLMKGKHYYEVSCH-------------DQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI---DKGHVKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL................................................................................... 214
2 -50.6003toj_A mol:protein length:213 Set1/Ash2 histone methyltransferase complex subunit ASH2  ali model follow..  25  6...........................................................................................................................................................................................................RACLYERVLLALHDRAPQLKISDDRLTVVGEKG------YSMVRASHGVRKGAWYFEITV----------DEMPPDTAARLGWSQPLGNLQLGYDKFSYSWRSKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTSSEIIFYKNGVNQGVAYKDIFE---GVYFPAISLYKSCTVSINFGP-CFKYPPKDLTYRPMSDMGWGAVVEHTL.............................................................................................. 203
3 -49.3006e2h_D mol:protein length:214 Set1/Ash2 histone methyltransferase complex subunit ASH2  ali model follow..  25  2..........................................................................................................................................................................................................TYAMGSMRVLLALHDRAPQLKISDDRLTVVGEKG------YSMVRASHGVRKGAWYFEITV----------DEMPPDTAARLGWSQPLGNLQLGYDKFSYSWRSKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTGSEIIFYKNGVNQGVAYKDIFE---GVYFPAISLYKSCTVSINFGP-CFKYPPKDLTYRPMSDMGWGAVVEHTLA............................................................................................. 200
4 -49.3004p9j_C mol:protein length:180 Ryanodine receptor 1  ali model follow..  17  1........................................................................................................................................................................................................................................................SNADRVRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDLGADELAYVFNGHRGQRWHLGSEPFGRPWQSGDVVGCMIDL---TENTIIFTLNGEVLMSDSGS-REIEIGDGFLPVCLGPGQVGHLNLGQDVSSLRFFAICGLQEGFEPFAINMQRPVTTWFSKSLPQF................................................................................... 179
5 -48.9005c33_A mol:protein length:198 Ryanodine receptor 2  ali model follow..  20  6..................................................................................................................................................................................................................................................VSSMRPNISAQYKKWYYELMVDHT------PFVTAEATHLRVGWASTEGYSPVGDDLFSYGFDGLHLWSGRTVSSPNQHLLRTDDVISCCLDL---SAPSISFRINGQPVQGMFENFNI---DGLFFPVVFSAGIKVRFLLGGRHGEF..................................................................................................................... 165
6 -48.7005vsn_A mol:protein length:169 Ryanodine receptor 2  ali model follow..  21  2..................................................................................................................................................................................................................................................FRIFRAEKAVKAGRWYFEFEAV-------------TAGDMRVGWSRPGCQLDLGSDDRAFAFDGFKAQRWHQGNEHYGRSWQAGDVVGCMVDM---NEHTMMFTLNGEILLDDSGS-KDFDVGDGFIPVCLGVAQVGRMNFGKDVSTLKYFTICGLQEGYEPFAVNTNRDITMWLS......................................................................................... 169
7 -48.0004p9l_A mol:protein length:177 Ryanodine receptor 2  ali model follow..  20  1..........................................................................................................................................................................................................................................SNAGTGERFRIFRAEKAVKAGRWYFEFEMV-------------TAGDMRVGWSRPGCQPDLGSDDRAFAFDGFKAQRWHQGNEHYGRSWQAGDVVGCMVDM---NEHTMMFTLNGEILLDDSGS-KDFDVGDGFIPVCLGVAQVGRMNFGKDVSTLKYFTICGLQEGYEPFAVNTNRDITMWLSK........................................................................................ 177
8 -45.5005ji7_A mol:protein length:243 Ran-binding protein 9  ali model follow..  16  3...................................................................................................................................................................AGPGPAGGAPTPALVAGSSAAAPFPHGDSALNEQEKELQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPK-DAASVRATHPIPAACGIYYFEVKIVSDGYMGIGLSAQGVNMNPGWDKHSYGYHGDDGHSFSGTGQPYGPTFTTGDVIGCCVNLINN---TCFYTKNGHSLGIAFTDLP---PNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQ....................................................................................................... 243
9 -45.0005jia_A mol:protein length:210 Ran-binding protein 10  ali model follow..  18  1..................................................................................................................................................................................................SPGEQELSRRLQRLYPAVNQHETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHK-DAASVRATHPIPAACGIYYFEVKIVSKGYMGIGLSAQGVNMNPGWDKHSYGYHGDDGHSFSGTGQPYGPTFTTGDVIGCCVNLING---TCFYTKNGHSLGIAFTDLP---ANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQ....................................................................................................... 210
10 -41.3002yyo_A mol:protein length:171 SPRY domain-containing protein 3  ali model follow..  19  3.................................................................................................................................................................................................................................SGSSGFKHILVDGDTLSYHGYVASRPLTKDSNYFEVSIVDSG----------VRGTIAVGLVPQYYSLDPGWLPDSVAYHADDGKLYNGKGRQFGSKCNSGDRIGCGIEPVSFDTAQIFFTKNGKRVGSTIMPMSP--DGLFPAVGMHSLGEEVRLHLNA-ELSGPSS.................................................................................................................. 170
11 -39.3004qt6_A mol:protein length:159 Probable E3 ubiquitin-protein ligase HERC1  ali model follow..  18  3................................................................................................................................................................................................................................DPEKAQCCLVENGQILTHKGYGLASTGVTSGCYQWKFYIVKE-----------NRGNEGTCVGVSRWPVHHRTTSDMWLYRASGNLYHNGEQTLTLSSFTQGDFITCVLDM---EARTISFGKNGEEPKLAFE----DVDAAELYPCVMFYSS----NPGEKVKICDMQ.................................................................................................................. 157
12 -37.0003emw_A mol:protein length:217 SPRY domain-containing SOCS box protein 2  ali model follow..  17  2..............................................................................................................................................................................SSGVDLGTENLYFQSMPEGLEELLSAPPPDLGAQRRHGWNPKDCSENIEVKEGGLY---FERRPVAQSTDGARGKRGYSRGLHAWEISWPLE--------QRGTHAVVGVATALAPLQTDLGSNSESWGWDIGRGKLYHQPAGTQGEQLEVPERLLVVLDM---EEGTLGYAIGGTYLGPAFR----GLKGRTLYPAVSAVQCQVRIRYLGE......................................................................................................................... 211
13 -36.1006bx3_K mol:protein length:417 COMPASS component BRE2  ali model follow..  18  2................................................................................................................................................................................................................DHSGMSVMDRSEGLSISRDGNDLVSVPDQY----WRTARSDVCIKEGMTYWEVEVIRGGNKKKMHKQVNDTPHLRFGVCRREASLEVGFDVYGYGIRDISLESIHNCVLENGSPLKEGDKIGFLLSLPSIEDSYLAIFQNGKYLGKAFENLKPLLNKLGYYPTISCNGGTARIISEED......................................................................................................................... 369
14 -35.4002ihs_A mol:protein length:214 CG2944-PF, isoform F  ali model follow..  17  36.....................................................................................................................................................................................................................NSEDRSLNIFVKEDDKLT--FHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTR----------QRGTHAVVGVCTADAPLHVGSTEQSWGWDLGRNKLYHDAILKNDEAFLVPDKFLVALDM---DEGTLSFIVDQQYLGIAFR----GLRGKKLYPIVSAGHCEITMRYIGGLV....................................................................................................................... 210
15 -35.2002fnj_A mol:protein length:226 CG2944-PF, isoform F  ali model follow..  17  34.....................................................................................................................................................................................................................NSEDRSLNIFVKEDDKLT--FHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTR----------QRGTHAVVGVCTADAPLHVGSTEQSWGWDLGRNKLYHDAILKNDEAFLVPDKFLVALDM---DEGTLSFIVDQQYLGIAFR----GLRGKKLYPIVSAVHCEITMRYIGGLDPEPLP.................................................................................................................. 213
16 -35.1005xn3_A mol:protein length:209 SPRY domain-containing SOCS box protein 2  ali model follow..  17  2.........................................................................................................................................................................................GDLSCPEGLEELLSAPPPDLGAQRRHGWNPKDCSENIEVKEGGLY---FERRPVAQSTDGARGKRGYSRGLHAWEISWPLE----------QRGTHAVVGVATALAPLQLGSNSESWGWDIGRGKLYHQPAGTQGEQLEVPERLLVVLDM---EEGTLGYAIGGTYLGPAFR----GLKGRTLYPAVSAVQCQVRIRYLGE......................................................................................................................... 200
17 -35.0002v24_A mol:protein length:208 SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 4  ali model follow..  18  1......................................................................................................................................................................................SMGAEPGRPARLDQLLDMPAAGLAVQLRHAWNPEDRSLNVFVKDDDRLT--FHRHPVAQSTDGIRGKVGHARGLHAWQINWPAR----------QRGTHAVVGVATARAPLHVGSDAESWGWDLGRSRLYHDAFLGPDEAFALPDSLLVVLDM---DEGTLSFIVDGQYLGVAFR----GLKGKKLYPVVSAVHCEVTMRYING......................................................................................................................... 204
18 -34.3002afj_A mol:protein length:226 gene rich cluster, C9 gene  ali model follow..  15  2...........................................................................................................................................................................SSARQSTPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGGLC---FERRPVAQSTDGVRGKRGYSRGLHAWEISWPLE----------QRGTHAVVGVATALAPLQLGSNSESWGWDSKGLEAPQYPAGPQGEQLVVPERLLVVLDM---EEGTLGYSIGGTYLGPAFR----GLKGRTLYPSVSAGQCQVRIRYMGERRVEETR.................................................................................................................. 221
19 -33.9003f2o_A mol:protein length:233 SPRY domain-containing SOCS box protein 1  ali model follow..  16  2....................................................................................................................................................................SSGVDLGTENLYFQSMQELQGLDYCKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKEDDKLI--FHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMR--------QRGTHAVVGVATADAPLHSVVGNNHESWGWDLGRNRLYHDAFLEPDETFIVPDSFLVALDM---DDGTLSFIVDGQYMGVAFR----GLKGKKLYPVVSAVHCEIRMRYLNG......................................................................................................................... 223
20 -30.5006chg_B mol:protein length:405 KLLA0C10945p  ali model follow..  12  7............................................................................................................................................PYLDYDIVDLGSDIKKPDFPQLSESHRINEQQYYITEDTPLNKRNFMYQPCAANLMLDKLKYCGTDYFDKSSINLMDRSDKLAFSLDDHSVSVSENCG----WRSVRSDVCMKEGKIYWEVEV----------KNVSDTSHIRCGISRREASTEVGCDFYGYSIRDGLQVIHEGRLHTVPHEMQAGDRIGFLLTLPSLQNSSFEVFVNGVSHGIAFEGLTPFLNRLGYYATLSSQGGTASITEAME......................................................................................................................... 370
21 -24.7002kvu_A mol:protein length:75 MKL/myocardin-like protein 1  ali model follow..  35  19.NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQISPVPGAPKAPAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 69
22 -24.3002do1_A mol:protein length:55 Nuclear protein Hcc-1  ali model follow..  37  8VELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAESGPSSG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 55
23 -24.3001zrj_A mol:protein length:50 E1B-55kDa-associated protein 5 isoform c  ali model follow..  83  8MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGPSSG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 50
24 -21.6002rnn_A mol:protein length:114 E3 SUMO-protein ligase SIZ1  ali model follow..  19  36.LMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDP........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 82
25 -20.1002wqg_A mol:protein length:51 PROTEIN THO1  ali model follow..  31  4.DYSSLTVVQLKDLLTKRNLSVGGLKNEWVQRLIKDDEESKGESEVSPQ.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 51
26 -20.0001h1j_S mol:protein length:51 THO1 PROTEIN  ali model follow..  33  4.DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKGESEVSPQ.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 51
27 -17.3001jjr_A mol:protein length:151 THYROID AUTOANTIGEN  ali model follow..  19  54.TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQE......................................................................................................................................................................................................................................................................................................................................................................................................................................... 134
28 -16.6002e63_A mol:protein length:170 KIAA1787 protein  ali model follow..  14  16............................................................................................................................................................................................................................LVSLSACGRTARRQQPGQ-EFNHGLVLSREPLRDGRV-FTVRIDR--------KVNSWSGSIEIGVTALDPSVLTGLKGGSWVVSGCSVLRDGRSYGQDLDQLGEGDRVGVERT----VAGELRLWVNGRDCGVAATGLPPR-----VWAVVDLYGKCTQITV............................................................................................................................ 169
29 -16.3002rno_A mol:protein length:110 Putative DNA-binding protein  ali model follow..  13  17..LAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIEE............................................................................................................................................................................................................................................................................................................................................................................................................................ 109
30 -14.0001v66_A mol:protein length:65 Protein inhibitor of activated STAT protein 1  ali model follow..  30  11..VMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 52
31 -12.4004q4g_X mol:protein length:472 Peptidoglycan endopeptidase RipA  ali model follow..  11  109IAAAQHRFDTFAAATYMNGIATVTAAKTLSASSQAVMANLQRARTERVNTESAARLAKQKADKAAADAKASQDAAVAALTETRRKFDEQREEVQRLAAERDAAQARLQAARLVAWSSEGGQGAPPFRMWDPGSGPAGGRAWDGLWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQ-----ASEYVIRRGMSQIGVPYSWGGGNASKGIDSGA--------------------------TVGF---DAS---G----LYSFAGVGIKLPHYSGSQYGRKIPSGDVI-----YGPNGSQHVTYLGNGQMLGLKVRVAP................................................................................................................................................... 456
32 -11.8005fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  8  402...ATLTIDEAEKRMDKK---SGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHK.......................................................................................................................................................................................................................................................................................................... 604
33 -11.6005oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  8  414...XXLTIDEAEKRMDKK---SGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHK.......................................................................................................................................................................................................................................................................................................... 616
34 -11.5004v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  7  397...ATLTIDEAEKRMDKK---SGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFGEKKIDEDGEKIKKALQKTELAALYSSDEDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANAHVHK.......................................................................................................................................................................................................................................................................................................... 599
35 -11.4005xjc_x mol:protein length:703 Protein CASC3  ali model follow..  9  1............................MADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPA------------------------------------------------------IPRKGLFFEHDLRGQTQE------RPKGRQRKLWKDEGRWEHD-QAPKSRQELIALYG------DI................................................................................................................................................................................... 244
36 -11.3002kve_A mol:protein length:65 Mesencephalic astrocyte-derived neurotrophic factor  ali model follow..  20  14.DLKKLRVKELKKILDDWGETCKGEKSDYIRKINELMPKYAPKAASARTD......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 64
37 -11.2005mqf_S mol:protein length:2752 Serine/arginine repetitive matrix protein 2  ali model follow..  7  67....ELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDVNPGGKEETPGQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASS.......................................................................................................................................................................................................................................................................................................... 271
38 -11.0004bit_A mol:protein length:161 CEREBRAL DOPAMINE NEUROTROPHIC FACTOR  ali model follow..  22  111VDLRKMRVAELKQILHSWGEECRAEKTDYVNLIQELAPKYAATHPKTE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 160
39 -10.9005iy6_S mol:protein length:517 General transcription factor IIF subunit 1  ali model follow..  12  153...RTLTAEEAEEEWERRNKVLNHFSIMQQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEAS.......................................................................................................................................................................................................................................................................................................... 358
40 -10.9003gdb_A mol:protein length:937 Putative uncharacterized protein spr0440  ali model follow..  12  7....QLE--NLYFQGEETAVENSGANTELVS-------GESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSKAKDHASVGGEEFKAYAFDYWQYLVIDAGHRNGVPVGTLFFN-RFAEALKQDADGSFPIARKLVDMGYYSKEYAAKVNHPIKYSWYDANYGRYHQDGLGEYNYQFVPADNF--FANFNWDKAKNDYTIATANWIG.......................................................................................................................................................... 408
41 -10.4005gky_A mol:protein length:5037 Ryanodine receptor 1  ali model follow..  13  854.CPVDTVQIVLPPHLER-----------IREKLAENIHELWALTRIEQGWTYGPVRDDNKRLHPCLVNFHSLPEPERNYNLQMSGETLKTLLALGCHVGMADEKAEDNLKKTKLPKTYMMSNGYKPAPLDLS-HVRLTPAQTTLVDRLAENGHNVWARDRVAQGWSYSAVQDIPARRNPRLVPYRLLDEATKRSNRDSLCQAVRTLLGYGYNIEPPDQEPS----------------------QVENQSRWDRVRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELDVELGADELAYVFNGHRGQRWHLGSEPFGRPWQSGDVVGCMIDLTEN---TIIFTLNGEVLGSETAFREIEIGDGFLPVCSLGPGQVGHLNLGQDVSSLRFFAICGLQEGFEPFAINMQRPVTTWFSKSLPQFEPV................................................................................ 1248
42 -10.3001rm1_C mol:protein length:286 Transcription initiation factor IIA large chain  ali model follow..  10  6..ASRVIIVEVREDFENAGIDEQ-----TLQDLKNIWQKKLTETKVTTFSWDNQFNEGNINGVQNDLNFNLATPGVNSSEFNIKEENTGNEGLILPNINSNNNIPHSGETNINTNTVEATNNSGATLNTNTSGNTNADVTSQPKIEVKPEIELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRT----KARWKCSLK----------------DGVVTIN----------RND---YTFQ------------------AQVEA................................................................................................................................................................................... 283
43 -10.3004cfg_A mol:protein length:630 E3 UBIQUITIN/ISG15 LIGASE TRIM25  ali model follow..  7  249KALLDASETTSTRKIKEEEKRVNSQFDTIYQILLKKKSEIQTLKEEIEQSLTKRDEFEFLEKASKLRGISTQPVYIPEVELNHKLIKGIHQSTIDLKNELKQCIGRLQEPTPSSGDPGEHDPASTHKSTRPVKKVSKEEKKSKKPPPVPALPSKLPTFGAPEQLVDLKQAGLEAAAKATSSHPNSTSLKAKVLETFLAKSRPELLEYYIKVILDYNTAHNKVALSECYTVASRPHPQRFTY-CSQVLGLHCYKKGIHYWEVELQ-------------KNNFCGVGICYGSMNRQLGRNSASWCVEFNTKISAWHNNVEKTLPSTKATRVGVLLNC---DHGFVIFFAVADKVHLMYKFRVDFTEALYPAFWVFSAGATLSI.............................................................................................................................. 626
44 -10.2005go9_A mol:protein length:4968 RyR2  ali model follow..  14  865.IPVDTSQIVLPPHLER-----------IREKLAENIHELWVMNKIELGWQYGPVRDDNKRQHPCLVEFSKLPEQERNYNLQMSLETLKTLLALGCHVGISDEHAEEKVKKMKLPKNYQLTSGYKPAPMDLSFIK---------TPSQEAMVDKLAENAHNVWARDRIRQGWTYGIQQDVKNRRNPRLVPYALLDDRTKKSNKDSLREAVRTLLGYGYNLEAPDQDHAARAEVCSGTGERFRIFRAEKTYAVKAGRWYFEFEAV-------------TAGDMRVGWSRPGCQ-ELGSDERAFAFDGFKAQRWHQGNEHYGRSWQAGDVVGCMVDMTEH---TMMFTLNGEILGSELAFKDFDVGDGFIPVCSLGVAQVGRMNFGKDVSTLKYFTICGLQEGYEPFAVNTNRDITMWLSKRLPQFLQVPSSHEHIEVTRIDGTIDSSP............................................................ 1281
45 -10.0006g90_J mol:protein length:620 U1 small nuclear ribonucleoprotein component SNU71  ali model follow..  5  284.DIIEFRTKVVSIEKEKKMKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKRKEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLANDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKSENYNADKNVSE.......................................................................................................................................................................................................................................................................................................... 491
46 -9.7605cwd_A mol:protein length:179 Designed helical repeat protein  ali model follow..  4  2...................................STKEDARSTCEKAARKAAESNDEEVAKQAAKDCLEVAKQAGMPTKEAARSFCEAAARAAAESNDEEVAKIAAKACLEVAKQAGMPTKEAARSFCEAAARAAAESNDEEVAKIAAKACLEVAKQAGMPTKEAARSFCEAAKRAAKESNDEEVEKIAKKACKEVAKQAGMPWLE............................................................................................................................................................................................................................................................................................................ 173
47 -9.7602kvd_A mol:protein length:160 Mesencephalic astrocyte-derived neurotrophic factor  ali model follow..  20  108VDLKKLRVKELKKILDDWGETCKGEKSDYIRKINELMPKYAPKAASARTD......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 159
48 -9.6204u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  8  1...........................................ASAALEVLFQGPGMMAKNNKTTEAKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDPNIYSKYADGSDRIIKPEINPVYDSDDSDAETQ------------------------------------------------------------------------TIG----NIPLSAYDEMPHIGYDINGKRIMRPA---------KGSALDQLLDSIELPEGGLLDKNSGSSLNLT........................................................................................................................................................ 230
49 -9.6004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  12  50MPFKCMQLTDVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA.................................................................................................................................................................................................................................................................................................................................................................. 215
50 -9.4902b5l_C mol:protein length:222 Nonstructural protein V  ali model follow..  11  1MDPTDLSFSP--NKLIETGLNT-------VEYFTSQQVTGTSSLGKNTIPPGVTGLLTNAAEAKIQESTNHQKGSVGGGAKPKKPRPKIAIVPADDKTVPGKPIPNPLLGLDSTPSTQTVLDLSGKTLPSGSYKGVKLAKFGKENLMTRFIEEPRENPIATSSPIDFKRGRDTGGFHRRE....................................................................................................................................................................................................................................................................................................................................... 174
51 -9.3004jjn_K mol:protein length:382 Regulatory protein SIR3  ali model follow..  7  147..IAVGQILPESQ-LVRYACEPTAEKKQSNEYLKRVSVPVSGQKTNRQVMHKMGVERSSKRLAKKPSMKKIKIEPSADDDVNNGNIPSQRGTSTTHGSISPQEESVSPNISSASPSALTSPTDSSKILQKRSISKELIVSEEIPINSSEQESDYEPNNETSVLSSKPGSKPEKTSTELVDGRENFVYANNPEVSDDGGLEEETDEVS............................................................................................................................................................................................................................................................................................................ 382
52 -9.2705iy6_N mol:protein length:376 Transcription initiation factor IIA subunit 1  ali model follow..  7  10..VPKLSVIEVRDIFLDDGVDEQ-----VLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQQHQPQQQQQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHMNASNMSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQSVVLQQQVIPQMQPGGVQAPVIQQVLAPLPGGISPQTGVIIQPQQ.......................................................................................................................................................................................................................................................................................................... 218
53 -9.2602rqy_A mol:protein length:171 Putative uncharacterized protein  ali model follow..  20  113VDLKKLRVKELKKILDDWGEMCKGEKSDYIRKINELMPKYAPKAASARTD......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 164
54 -9.0605khe_A mol:protein length:269 capsid protein  ali model follow..  10  1.............................MEDLQKALEAQSRALRAELAAGASQSRRPRPPRQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRRDWSRAPPPPEERQETRSQTPAPKPSRAPPQQPQPPRMQTGRGGSAPRPELGPPTNPFQAAVARGLRPPLHDPDTEAPTEACVTSWLWSEGEGAVFYRVDLHFTNLGTPPLDEDGR........................................................................................................................................................................................................................................................................................................... 179
55 -9.0406fln_A mol:protein length:445 E3 ubiquitin/ISG15 ligase TRIM25  ali model follow..  8  67LDASETTSTRKIKEEEKRVNSK----DTIYQILLKKKSEIQTLKEEIEQSLTKRDEFEFLEKASKLRGISTKPVYIPEVELNHKLIKGIHQSTIDLKNELKQCIGRLQEPTPSSGDPGEHDPASTHKSTRPVKKVSKEEKKSKKPPPVPALPSKLPTFGAPEQLVDLKQAGLEAAAKATSSHPNSTSLKAKVLETFLAKSRPELLEYYIKVILDYNTAHNKVALSECYTVASRPHPQRFTY-CSQVLGLHCYKKGIHYWEVELQ-------------KNNFCGVGICYGSMNRQLGRNSASWCWFNTKISAWHNNVEK-----TKATRVGVLLNC---DHGFVIFFAVADKVHLMYKFRVDFTEALYPAFWVFSAGATLSI.............................................................................................................................. 441
56 -9.0105lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  7  50MPFKCMQLTDVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAALLKASPKKAPVAKGAVAAAAAAAKVPAKKATAAGKKAAAQKAPAQKAPAQKAAGQKAAQPPKAQKGQKPPAQKAPAPKASGKKA............................................................................................................................................................................................................................................................................................................................................................... 218
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;