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Query: [S] KOG2827 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSATKHNERVGRRNDRKRDASQACLPERSPSLRSEPRQQRSHPYLQTRTNTHRQRPMIRPSSVVSMSGRSIAPSDSSENDDRHFDVDEEMESMSLDSPLPIEVPARPFPDKPYYWMNDYKTLEFIRTNFPSDSFYVMHNGKIIENFNAFIDENMGQSLVKYSFHLRVRGGKGGFGSLLRSFRVNKSTNKLMMRDLNGRRMASVDEEAKLKRYLEKQARKEQELKEKRKAKLEKLTAGPAKHMFEDQDYLSRREEIINKTEDACEAGFALMLEMKRNSRKSKEQENKNDEDEDDDVNAEDVTDLFNDRGGRKRKIAAPSIGEDGGNKRINDESDDSEDDSENEVDPEELEAIRQYFEAKKQDEKDNGEGTSEAVPEVLVDEQEIEPAKRPRLDSASNIDDLPKIDVKTPCEYGPISLDDFTSAEDLELLGLEHLKSALNDRGLKCGGSLVERAARLWCVKGKQPREYPKNILTPELKKKIAEEEEAERKAAKKAKKSKKNQLast
1 -22.8005vix_A mol:protein length:160 Polyubiquitin  ali model follow..  18  28.VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR-----------------------------------------LRGGMQIFVKTLTGKTITLEVESNDTIENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 154
2 -22.1003u30_A mol:protein length:172 linear di-ubiquitin  ali model follow..  19  41..KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR-----------------------------------------LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 166
3 -21.8005chf_A mol:protein length:155 Ubiquitin-like protein ISG15  ali model follow..  15  28.LKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNSSEP----------------------------------------LSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQC-TVIKHLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 155
4 -21.1004zqs_A mol:protein length:157 ubiquitin  ali model follow..  18  31.VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG-----------------------------------------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 157
5 -20.7005v6a_B mol:protein length:104 ME.2  ali model follow..  11  2.........................................................................AVTSLYKKAGSTDYKDDDDKMRIFVETLRRLTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFFGQQLEDGRTLSDYNIVKYS-TLHLILRLPRWN......................................................................................................................................................................................................................................................................................................................................... 98
6 -20.6005b83_A mol:protein length:304 tetra ubiquitin  ali model follow..  15  102.VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHIQDKEGIPPDQQRLIFAGKQLEDGRTL--SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 304
7 -20.2005v69_B mol:protein length:104 ME.4  ali model follow..  11  2.........................................................................AVTSLYKKAGSTDYKDDDDKMRIFVETLRRLTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFFGQQLEDGRTLSDYNIVKYS-TLHLILRLNSW.......................................................................................................................................................................................................................................................................................................................................... 97
8 -19.9005v5g_B mol:protein length:105 Ubiquitin variant CC.4  ali model follow..  11  2.........................................................................AVTSLYKKAGSTDYKDDDDKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKLS-LLYLVWRLGVP.......................................................................................................................................................................................................................................................................................................................................... 97
9 -19.7003r66_C mol:protein length:164 Ubiquitin-like protein ISG15  ali model follow..  13  29.LKAQITQKIGVHAFQQRLAVSGVALQDRVPLASQGLGPGSTVLLVVDKC----------------------------------------DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLS-TVFMNLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 158
10 -19.6005v5i_B mol:protein length:105 Ubiquitin variant CC.1  ali model follow..  12  2.........................................................................AVTSLYKKAGSTDYKDDDDKMQIFVKTLKGHVITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFALQQLEDGRTLSDYNIQKES-NLHLVLRLGGG.......................................................................................................................................................................................................................................................................................................................................... 97
11 -19.5005v5h_B mol:protein length:105 Ubiquitin variant CC.2  ali model follow..  12  2.........................................................................AVTSLYKKAGSTDYKDDDDKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIRKQ-SNLYLLWRLGGW.......................................................................................................................................................................................................................................................................................................................................... 97
12 -19.4003rt3_B mol:protein length:159 Ubiquitin-like protein ISG15  ali model follow..  13  28.LKAQITQKIGVHAFQQRLAVSGVALQDRVPLASQGLGPGSTVLLVVDKS----------------------------------------DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLS-TVFMNLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 157
13 -19.3005ucl_A mol:protein length:89 Polyubiquitin-B  ali model follow..  14  8.............................................................................................MQIFVQTITVMRIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGMQLEDGRTLSDYNIKRDS-NLYLVSSLRSLRAGAAA.................................................................................................................................................................................................................................................................................................................................... 89
14 -19.2004hcn_B mol:protein length:98 Polyubiquitin  ali model follow..  14  2..............................................................................GSSSSGENLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 92
15 -19.1003vdz_A mol:protein length:111 Ubiquitin-40S ribosomal protein S27a  ali model follow..  15  2.........AGYIDTDNDGSIDGDELY--------------------------------------------------IDTDNDGSIDGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE-STLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 111
16 -18.8005knl_B mol:protein length:96 Ubiquitin  ali model follow..  14  2................................................................................GSSSSGLVPRGSHMQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYNIQRES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 90
17 -18.8003dbh_I mol:protein length:88 NEDD8  ali model follow..  13  1.................................................................................GSRRASVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGS-VLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 88
18 -18.8004ii3_B mol:protein length:96 Ubiquitin-60S ribosomal protein L40  ali model follow..  15  2................................................................................GSSSSGLVPRGSHMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 90
19 -18.7003n3k_B mol:protein length:85 Ubiquitin  ali model follow..  18  4.............................................................................................MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHS-ALYLLLKLRGGGGG....................................................................................................................................................................................................................................................................................................................................... 82
20 -18.7003dbl_I mol:protein length:88 NEDD8  ali model follow..  12  1.................................................................................GSRRASVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGS-VLHLVLQLRGG.......................................................................................................................................................................................................................................................................................................................................... 88
21 -18.5003rul_A mol:protein length:79 Ubiquitin  ali model follow..  17  1.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGCKAA....................................................................................................................................................................................................................................................................................................................................... 79
22 -18.4001we7_A mol:protein length:115 Sf3a1 protein  ali model follow..  12  3............................................................SGSSGTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASG-AVIHLALKERSG.......................................................................................................................................................................................................................................................................................................................................... 111
23 -18.3003ai5_A mol:protein length:309 yeast enhanced green fluorescent protein,Ubiquitin  ali model follow..  10  98.ERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRL............................................................................................................................................................................................................................................................................................................................................. 308
24 -18.3004fjv_B mol:protein length:86 Polyubiquitin-C  ali model follow..  17  1...................................................................................YPYDVPDYAHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 86
25 -18.3003mtn_B mol:protein length:85 UBIQUITIN VARIANT UBV.21.4  ali model follow..  18  4.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWS-TLFLLLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 79
26 -18.3002ojr_A mol:protein length:111 Ubiquitin  ali model follow..  14  9..................................................................NDGWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 111
27 -18.2004whv_A mol:protein length:83 Polyubiquitin-B  ali model follow..  18  8.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 83
28 -18.2005vsx_A mol:protein length:89 Sacsin  ali model follow..  16  13.............................................................................................VPVTVLPGCVGCRTVAALASWTVRDVKERIFAETGFPVSEQRLWRGGRELSDWIKIGDLTSKNCHLFVNLQSKGLKG.......................................................................................................................................................................................................................................................................................................................................... 89
29 -18.2005o6s_A mol:protein length:83 Polyubiquitin-B  ali model follow..  12  6.............................................................................................MQILVTTISAETIRLEVEPSDTIENVKAKIQDKEGIPPDQQRLFFEGKQLEDGRTLSDYNINKKS-TLLLVVKFHRVA......................................................................................................................................................................................................................................................................................................................................... 82
30 -18.1005vsz_A mol:protein length:89 Sacsin  ali model follow..  16  13.............................................................................................VPVTVLPGCVGCRTVAALASWTVRDVKERIFAETGFPVSEQRLWRGGRELSDWIKIGDLTSKNCHLFVNMQSKGLKG.......................................................................................................................................................................................................................................................................................................................................... 89
31 -18.1004ii2_B mol:protein length:83 Ubiquitin-60S ribosomal protein L40  ali model follow..  16  1............................................................................................MMQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYNIQRES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 77
32 -18.0005hpt_B mol:protein length:83 Ubiquitin variant P2.3  ali model follow..  15  6.............................................................................................MQILVKTFTWKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIKMGS-SLYLVLRLPGQ.......................................................................................................................................................................................................................................................................................................................................... 81
33 -18.0002jvc_A mol:protein length:82 ubiquitin_like protein  ali model follow..  19  6.............................................................................................MQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSDYNVQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 81
34 -18.0005tte_F mol:protein length:86 ubiquitin  ali model follow..  17  1.........................................................................................MGSHMQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYNIQRES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 80
35 -18.0004gsw_A mol:protein length:80 Ubiquitin  ali model follow..  17  1..........................................................................................SNAMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 79
36 -18.0002mlb_A mol:protein length:79 redesigned ubiquitin  ali model follow..  11  1............................................................................................MDTINITLPDGKTLTLTVTPEFTVKELAEEIARRLGLSPEDIKLTHNGKTLDPSLTLAEYGITPGS-TITLEIKKKGG.......................................................................................................................................................................................................................................................................................................................................... 77
37 -17.9002hj8_A mol:protein length:88 Interferon-induced 17 kDa protein  ali model follow..  15  1.........................................................................................MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLS-TVFMNLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 80
38 -17.9004k1r_B mol:protein length:81 Polyubiquitin-C  ali model follow..  18  6.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 81
39 -17.9005vbt_A mol:protein length:79 UBH04  ali model follow..  15  2.............................................................................................MPIFVKTLTGKNITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFTGKKLEDGRTLSDYNIKFAS-TLHLVIRLRGAR......................................................................................................................................................................................................................................................................................................................................... 78
40 -17.9006dc6_B mol:protein length:80 Ubiquitin  ali model follow..  18  5.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 80
41 -17.9003jvz_X mol:protein length:81 Ubiquitin  ali model follow..  18  6.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 81
42 -17.8003dvg_Y mol:protein length:79 Ubiquitin  ali model follow..  18  4.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 79
43 -17.8004nnj_B mol:protein length:79 Uba1  ali model follow..  16  1..........................................................................................SAAMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 79
44 -17.8003olm_D mol:protein length:79 Ubiquitin  ali model follow..  16  1..........................................................................................SNAMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 79
45 -17.8002nvu_I mol:protein length:81 NEDD8  ali model follow..  14  6.............................................................................................MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGS-VLHLVLALRGG.......................................................................................................................................................................................................................................................................................................................................... 81
46 -17.7005c7m_B mol:protein length:84 Polyubiquitin-C  ali model follow..  14  1.............................................................................................MHILVKTLRGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLLFGGNKLEDGRTLSDYNIQKES-NLYLLLRRLGS.......................................................................................................................................................................................................................................................................................................................................... 76
47 -17.7005zq5_B mol:protein length:79 Ubiquitin  ali model follow..  18  4.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQALIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 79
48 -17.7003dqv_A mol:protein length:81 NEDD8  ali model follow..  14  6.............................................................................................MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIMGGS-VLHLVLALRGG.......................................................................................................................................................................................................................................................................................................................................... 81
49 -17.7004hk2_A mol:protein length:78 Ubiquitin  ali model follow..  17  3.............................................................................................MQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSDYNIQKES-TLRGVRRLRGG.......................................................................................................................................................................................................................................................................................................................................... 78
50 -17.7003dvg_X mol:protein length:80 Ubiquitin D77  ali model follow..  18  4.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGGD......................................................................................................................................................................................................................................................................................................................................... 80
51 -17.7005o76_E mol:protein length:82 UbV.pCBL ubiquitin variant  ali model follow..  15  6.............................................................................................MHIFVKTGIGPIISLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFVGKQLEDGRTLSDYNIRKAS-YLYLVLRLHRSS......................................................................................................................................................................................................................................................................................................................................... 82
52 -17.7002m0x_A mol:protein length:78 engineered ubiquitin variant  ali model follow..  18  3.............................................................................................MQIFVKGLTGKTTTLEVEPSDTIENVKAKIQDKTGLPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHIVWRLRGG.......................................................................................................................................................................................................................................................................................................................................... 78
53 -17.7003j79_f mol:protein length:128 60S ribosomal protein eL40  ali model follow..  18  1.............................................................................................MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG-----PSLAQLAQKYNCQKLICRKCYAR--NQLRPKKKLK.................................................................................................................................................................................................................................................................................................. 128
54 -17.7004nqk_E mol:protein length:79 Ubiquitin  ali model follow..  18  4.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 79
55 -17.6005ohm_A mol:protein length:77 Polyubiquitin-C  ali model follow..  18  1.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
56 -17.6001sif_A mol:protein length:88 ubiquitin  ali model follow..  18  4.............................................................................................LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 79
57 -17.6002zcb_A mol:protein length:76 Ubiquitin  ali model follow..  17  1.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
58 -17.6004hjk_A mol:protein length:77 Ubiquitin  ali model follow..  17  2.............................................................................................MQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHCVRRLRGG.......................................................................................................................................................................................................................................................................................................................................... 77
59 -17.6004hcp_B mol:protein length:78 NEDD8  ali model follow..  14  3.............................................................................................MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGS-VLHLVLALRGG.......................................................................................................................................................................................................................................................................................................................................... 78
60 -17.6005nl4_A mol:protein length:76 Polyubiquitin-C  ali model follow..  18  1.............................................................................................MQIFVKTLTGKTITLVVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
61 -17.6001zw7_A mol:protein length:82 Ubiquitin  ali model follow..  17  1.............................................................................................MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
62 -17.6002jwz_A mol:protein length:76 Ubiquitin  ali model follow..  17  1.............................................................................................MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHSVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
63 -17.6001c3t_A mol:protein length:76 PROTEIN (1D8 UBIQUITIN)  ali model follow..  18  1.............................................................................................MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNLQKES-TIHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
64 -17.6002n2k_A mol:protein length:76 ubiquitin  ali model follow..  17  1.............................................................................................MQIFVKTLTGKTITLEVEPSDTIECVKAKIQDKEGIPPDQQRLIFAGCQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
65 -17.6002fcn_A mol:protein length:76 Ubiquitin  ali model follow..  18  1.............................................................................................LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEVIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
66 -17.6002rsu_A mol:protein length:76 Ubiquitin  ali model follow..  18  1.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQNRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
67 -17.6001bt0_A mol:protein length:76 PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1)  ali model follow..  15  1.............................................................................................MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGS-VLHLVLALRGG.......................................................................................................................................................................................................................................................................................................................................... 76
68 -17.6002mws_A mol:protein length:76 Ubiquitin  ali model follow..  18  1.............................................................................................MQIFVKTLTGKXITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
69 -17.6006gf2_A mol:protein length:85 Ubiquitin D  ali model follow..  14  10.............................................................................................LFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTLNGKRLEDGKMMADYGIRKGN-LLFLASYSIGG.......................................................................................................................................................................................................................................................................................................................................... 85
70 -17.6005gvi_B mol:protein length:76 ubiquitin  ali model follow..  18  1.............................................................................................MQIFVRTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
71 -17.6001yiw_A mol:protein length:76 Ubiquitin  ali model follow..  18  1.............................................................................................LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
72 -17.6005tof_A mol:protein length:78 Polyubiquitin-B  ali model follow..  17  3.............................................................................................MQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHGVRRLRGG.......................................................................................................................................................................................................................................................................................................................................... 78
73 -17.6004jio_U mol:protein length:76 Ubiquitin  ali model follow..  18  1.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENVKMKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
74 -17.6005jg6_B mol:protein length:84 Polyubiquitin-B  ali model follow..  14  7.............................................................................................MQILVKTPRGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQILFFAVKRLEDGRTLSDYNIQKKS-SLLLAMRVPGK.......................................................................................................................................................................................................................................................................................................................................... 82
75 -17.6002nbd_A mol:protein length:76 entity  ali model follow..  18  1.............................................................................................MQIFVKTLTGKTITLEVEPSDTIENAKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLRGG.......................................................................................................................................................................................................................................................................................................................................... 76
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.