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Query: [R] KOG2897 DNA-binding protein YL1 and related proteins, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGDNLast
1 -46.2005chl_A mol:protein length:74 Vacuolar protein sorting-associated protein 72 homolog  ali model follow..  100  1.AASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPE.................................................................................................................................................................................................................................................................................... 74
2 -40.4005fug_C mol:protein length:68 VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 72 HOMOLOG  ali model follow..  52  2SHMGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQDQSDTEDEVDSDFDIDEGDE.............................................................................................................................................................................................................................................................................................. 67
3 -26.5006fhs_I mol:protein length:219 les6  ali model follow..  10  2..............................................................SNPDAQSAQAAHQALVEQLDLHSIHKTFRNPNWRPNQRRNKTIKAILGESQRKEASSTSAVATPRADDNGGGSGADTPANNDNNDGLSTSGTSTPANGNGSGAGTPASNGQPNLAQASRSLQKLVLEKSLASAQAPDKKAA-NGFASSAPTATYTN----------------------------------------------ESAPSLAPMKHYCDVTGLPAPYLDPKTRLRYHNKEIFAMIRNLPQGMGEQ..................................... 207
4 -15.3005fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  10  524...GEKKIDEDGERIKKALQKTELAAL-------YSSDENEINPYLSESDIE----NKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIGDGKVNIKEFGKFIRRKYPGAENKKL...................................................................................................................................................... 713
5 -15.2004v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  12  519...GEKKIDEDGEKIKKALQKTELAALYS------SDEDEINPYLSESDIENK-----ENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANAHVHKEPNLRVKSIKDCVIILKGDKKVLKSFPEGEWNPHAAKIKDISGNESNAVSAPIKKEKPLESIVVQEKETPAPLITEQDIIGDGKVNVKEFGKSIRRRYPGAENKKL...................................................................................................................................................... 708
6 -14.7005oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  11  536...GEKKIDEDGERIKKALQKTELAALYS------SDENEINPYLSESDIENK-----ENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIGDGKVNIKEFGKFIRRKYPGAENKKL...................................................................................................................................................... 725
7 -14.6006etx_R mol:protein length:356 INO80 complex subunit B  ali model follow..  12  121...................................AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSP-------------------PLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKT---------AATSGRGGRGGARGERRGGRAAAPAPMVRYCSGA---------------------------QGSTLSFPPGVPAPTAVSQRPSPSGPPPRCSVPGHPRRYACSRTGQALCSLQCYRINLQ............................................. 340
8 -12.3003jct_q mol:protein length:455 Ribosome biogenesis protein NOP53  ali model follow..  13  222.........HAGKSYSELINKEYKEEKAREDER--HLMETLDDNEEEESSSNEEEEEEEEENENENESTQCSGSDKEIKLSINKPVKNKKKTKYQRNKAKRHEEKVKLQQELKELRQRVKDLEEVINSEETEILSAIESDSNKVKKSKKNKKHKLGTKYSVIDERLEIKFSDELSDSLRKLKYDTVRKLQSSGKVETRVPVRKGRKYKQK............................................................................................................................................. 444
9 -10.9002yqq_A mol:protein length:56 Zinc finger HIT domain-containing protein 3  ali model follow..  25  1......................................................................................................................................................................................................................................................................GSSGSSGLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKE............................................. 44
10 -10.4005yz0_C mol:protein length:791 ATR-interacting protein  ali model follow..  10  31.....SKRA----RGFSAAAAPDPDDP------------AHGDFTADDEELDTLASQALSQCPAAARDVSSDHKVHRLLDGMSKNPSGKNRETVPIKDNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSKKQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSP........................................................................................................................................... 225
11 -9.9803jct_b mol:protein length:647 Nucleolar GTP-binding protein 1  ali model follow..  11  438...........GKNVYDFLDPEIAAK---------QALEEEEEKLENEGFYNSDDEEEIYDGFEASEVDDIKEKAAWIRNRQKTMIAEARNRKSLKNKAIMPRSKLTKSFGKMEEHDMSALQDKQNRAARKNRYVERGSDVVFGDQDALTASTENGVKLRQTDRLLDGVADGSMRSKADRMAKMERRERNRHAKQESDRHAVSLSKHLFSGK........................................................................................................................................... 638
12 -9.5905o9z_K mol:protein length:439 Microfibrillar-associated protein 1  ali model follow..  9  157...................................QERKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRELKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNK............................................................................................................................................... 329
13 -9.5006cnb_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7  ali model follow..  8  193...................GAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEE.................................................................................................................................................................................................................................................................................... 248
14 -9.4606eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7  ali model follow..  21  187...................DASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDFNNGDDDDYGDEEDPNEEA................................................................................................................................................................................................................................................................................... 249
15 -9.3302qzv_A mol:protein length:873 Major vault protein  ali model follow..  5  605.....KNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKK................................................................................................................................................ 806
16 -9.1801rxt_A mol:protein length:496 Glycylpeptide N-tetradecanoyltransferase 1  ali model follow..  12  2......................................ADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLW....................................................................................................................................... 199
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.