current user: public |
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Query: [U] KOG3225 Mitochondrial import inner membrane translocase, subunit TIM22, from COG1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . | |||||||
# | Score | Template | Links and tools | %id | First | MVYTGFGLEQISPAQKKPYNELTPEEQGERGAEMIMNFMTSCPGKSVVSGVTGFALGGVLGLFMASMAYDTPLHTPTPANTAATATAGNIGVGGISRTVQQISDLPFRQQMKLQFTDMGKKSYSSAKNFGYIGMIYAGVECVIESLRAKNDIYNGVTAGFFTGAGLAYKAGPQAALMGGAGFAAFSAAIDLYMKSEDGRPPQNDFKE | Last |
1 | -39.800 | 5gup_V mol:protein length:141 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 | ali model follow.. | 16 | 16 | .......................................TECHRKAYASTSIGGATGLIVSAYSIALKP------------------------------------------PASFLEGVARTGRYTFTSAAIGAIFGLTSCISAQVREKDDPLNYFIGGCAGGLTLGARTRYGIGAAACAYMGLTAALVKMGQLEGWQVFAEPKV.. | 141 |
2 | -39.400 | 6gcs_J mol:protein length:198 NUJM SUBUNIT | ali model follow.. | 14 | 1 | .....................MSEHVHLPSPTFNTSSAGHFHPYNTLGLATQSAMVGLGAGVVAAAAR-------------------------------------NSLATGPRNILTTFSKSGGVVTIFTGASIAYVFTYCSAANLRERKDGWNHMWAGAATGAVLGARTKVPAFIGWTVLCGAACGLFGWTGARFNADRKASLEQS | 150 |
3 | -38.800 | 6g2j_Y mol:protein length:143 MCG5603 | ali model follow.. | 17 | 18 | .......................................TQCHRKTYITTALGGICGIIGSAYSVSLNP------------------------------------------ADSTLEAVARVGRYTFTAAAIGAMFGLTTCVSAQVREKDDPLNYFIGGCAGGLTLGATHSYGTAAMGCVYMGTAAALFKIGKLEGWELFPTPKV.. | 143 |
4 | -38.200 | 5ldw_Y mol:protein length:141 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 | ali model follow.. | 16 | 16 | .......................................TECHRKTYATTSIGGAAGLVVSAYSVAL------------------------------------------KTPTSFLEGVARTGRYTFTAAAIGAIFGLTSCISAQVREKDDPLNYLIGGCAGGLILGARTRYGIGAAACAYMGLTAALVKMGQLEGWQVFAEPKV.. | 141 |
5 | -37.700 | 5xtc_V mol:protein length:140 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 | ali model follow.. | 12 | 15 | .......................................TDCHRKAYSTTSIASVAGLTAAAYRVTLNP------------------------------------------PGTFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKDDPLNYFLGGCAGGLTLGARTHYGIGAAACVYFGIAASLVKMGRLEGWEVFAKPKV.. | 140 |
6 | -8.030 | 5sv0_B mol:protein length:244 Biopolymer transport protein ExbB | ali model follow.. | 15 | 131 | ....................................................................................................................GYLATIGAISPFVGLFGTVWGIMN-SFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQ..... | 215 |
7 | -7.450 | 3n6z_A mol:protein length:363 putative immunoglobulin A1 protease | ali model follow.. | 13 | 114 | ..........................................CSAGDYPSFFGVLCGDCRNVGFVNAS-------------VSSARQGIGIITGYLGLKDKGNGNKTGRIVNCYTTGEVIGSGAAGGIAGVLANSYDGQESYIKNCYSNATVSDRAASGGKAGGIAGRKVGVGGFIENCYAYGAVSATKGGVGG............. | 252 |
8 | -7.000 | 4c9g_A mol:protein length:318 ADP, ATP CARRIER PROTEIN 2 | ali model follow.. | 10 | 128 | ..................................................AGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGA------GLIDVYKKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTGVGSLFKGCGANILRGVAGAGVISMYDQLQMILFGKKFK..... | 318 |
9 | -6.760 | 4c9j_A mol:protein length:322 ADP, ATP CARRIER PROTEIN 3 | ali model follow.. | 9 | 117 | ............................................GYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKSSKKGGA------GLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLKPLVLTGSLDGSFLASFLLGWVVTGVGSLFKGCGANILRSVAGAGVISMYDQLQMILFGKKFK..... | 313 |
10 | -6.600 | 4c2i_A mol:protein length:495 ENVELOPE PROTEIN | ali model follow.. | 8 | 292 | LTLKGMSYVMCTGSFKLEKEVAETQHGTVLVQIKYEGTDAPCKIPFSTQDEKGVTQNGRLITANPIVTDKEKPVNIEAEPPFGESYIVIGAGEKALKLSWFKKGSSIGKMFEATARGARRMAGDTAWDFGSIGGVFTSVGKLVHQIFG--TAYGVLFSGIGIGVLLGLNSRSTSLSMTCIAVGLVTLYLG................. | 490 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11. |