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Query: [O] KOG4146 Ubiquitin-like protein, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAIKVELLGGLDLLFNKQKALSLSLSNLGSTKLGSLIDYMAQIIEKPSQKDLFILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHGKTIFSIFFIIFKTNCINLast
1 -50.2002k9x_A mol:protein length:110 Uncharacterized protein  ali model follow..  38  5NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFISTLHGGLE.............. 104
2 -50.2002ax5_A mol:protein length:107 Hypothetical 11.0 kDa protein in FAA3-MAS3 intergenic region  ali model follow..  40  2VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTLHGGLE.............. 101
3 -46.8001wgk_A mol:protein length:114 RIKEN cDNA 2900073H19 protein  ali model follow..  38  12LCVKVEFGGGAELLFDGVKKHQVALPGEEPWDIRNLLVWIKKNLLKE-RPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLHGGSGPSS........... 113
4 -43.9002m19_A mol:protein length:106 Molybdopterin converting factor subunit 1  ali model follow..  16  15MELELRFFATFREVVGQK---SIYWRVDDDATVGDVLRSLEAEYDGLAGRLI--EDGEVKPHVNVLKNGREVVHLDGMATALDDGDAVSVFPPVAGG................ 106
5 -42.6004idi_A mol:protein length:144 Oryza sativa Rurm1-related  ali model follow..  29  16VKIELKFLGGLESYLEDKSKNYVTLEIDKELNFENLIAFIRDNIIEKYSNYNLKDKAKIKPGIIVLVNEYDWEILGTYSYQIKNDDKICFLSTLHGG................ 138
6 -41.1002g1e_A mol:protein length:90 hypothetical protein Ta0895  ali model follow..  14  2..VTVRYYATLRPITKKK-----EETFNGISKISELLERLKVEYGSEFTK-QMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPPVAGG................ 90
7 -41.0003dwg_C mol:protein length:93 9.5 kDa culture filtrate antigen cfp10A  ali model follow..  21  1MNVTVSIPTILRPHTGGQKSVSAS-----GDTLGAVISDLEANYSGISERLM-SSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPAVAGG................ 93
8 -40.6004n6e_B mol:protein length:90 ThiS/MoaD family protein  ali model follow..  18  1MAVTVSIPTILRTHTGGEKSVEAK-----GATVLEIIDDVESRHAGIKARLV--KEEKLHRFINVYVNDEDVRFSGGLEAEVKDGDTLTILPAVAGG................ 90
9 -39.0002l52_A mol:protein length:99 METHANOSARCINA ACETIVORANS SAMP1 HOMOLOG  ali model follow..  15  4AEVKVKLFANLREAAGTPELP-------SGEKVIDVLLSLTDKYPALKYVIFEKGDEILCGSINILINGNNIRHLEGLETLLKDSDEIGILPPVSGG................ 99
10 -38.4004hro_A mol:protein length:90 Small archaeal modifier protein 1  ali model follow..  16  2AHMEWKLFADLAEVAGSR---TVRVDVDGDATVGDALDALVGAHPAL-ESRVFGDDGELYDHINVLRNGEAA----ALGEATAAGDELALFPPVSGG................ 90
11 -37.2003po0_A mol:protein length:89 Small archaeal modifier protein 1  ali model follow..  17  2.SMEWKLFADLAEVAGSR---TVRVDVDGDATVGDALDALVGAHPAL-ESRVFGDDGELYDHINVLRNGEAA----ALGEATAAGDELALFPPVSGG................ 89
12 -37.1002l83_A mol:protein length:95 Small archaeal modifier protein 1  ali model follow..  16  1..MEWKLFADLAEVAGSR---TVRVDVDGDATVGDALDALVGAHPAL-ESRVFGDDGELYDHINVLRNGEAA----ALGEATAAGDELALFPPVSGGLE.............. 89
13 -36.5001vjk_A mol:protein length:98 molybdopterin converting factor, subunit 1  ali model follow..  16  4VKVKVKYFARFRQLAGVD---EEEIELPEGARVRDLIEEIKKRHEKF-KEEVFGEGYDEDADVNIAVNGRYVS----WDEELKDGDVVGVFPPVSGG................ 92
14 -33.2004wwm_A mol:protein length:91 Uncharacterized protein  ali model follow..  22  2..PKVILKGPLISQFNFREIY-------NDRELLRVLVKIDSKKHL-----ILNESNQLKSGILILINGKDWRLYR--NQLLNDNDIIEIIPINHGGLE.............. 85
15 -33.0001v8c_A mol:protein length:168 MoaD related protein  ali model follow..  16  2...KVNLYATFRDLTGKS---QLELP---GATVGEVLENLVRAYPALKEELF--EGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPVAGGG............... 88
16 -32.7005mpo_A mol:protein length:106 Molybdopterin synthase sulfur carrier subunit  ali model follow..  20  17SMVEVLYFAKSAEITGVR---SETISVPQEIKALQLWKEIETRHPGL---------ADVRNQIIFAVRQEYVE-LGDQLLVLQPGDEIAVIPPISGG................ 100
17 -27.0002q5w_D mol:protein length:77 Molybdopterin converting factor, subunit 1  ali model follow..  14  1..MKVLYFAEIKDILQKA---QEDIVLEQALTVQQFEDLLFERYPQINNKKF-----------QVAVNEEFVQ----KSDFIQPNDTVALIPPVSGG................ 77
18 -26.6003rpf_C mol:protein length:74 Molybdopterin converting factor, subunit 1 (MoaD)  ali model follow..  16  1MMVEVRFFGPIKEENFF----------IKANDLKELRAILQEKEGLK----------EWLGVCAIALND---HLIDNLNTPLKDGDVISLLPPVCGG................ 74
19 -24.9001nvi_D mol:protein length:81 Molybdopterin converting factor subunit 1  ali model follow..  20  2..VKVLFFAQVRELVG-TDATEVAAD---FPTVEALRQHMAAQSDRWALAL--------DGKLLAAVNQTLVS----FDHPLTDGDEVAFFPPVTGG................ 81
20 -24.9001fm0_D mol:protein length:81 MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 1  ali model follow..  21  2..IKVLFFAQVRELVG-TDATEVAAD---FPTVEALRQHMAAQSDRWALAL--------DGKLLAAVNQTLVS----FDHPLTDGDEVAFFPPVTGG................ 81
21 -19.6005lda_B mol:protein length:69 SAMP2  ali model follow..  20  2KMIKVKVIGRNI---------EKEIEWREGMKVRDILRAV----------------GFNTESAIAKVNGKVVL----EDDEVKDGDFVEVIPVVSGG................ 69
22 -19.1001rws_A mol:protein length:77 hypothetical protein PF1061  ali model follow..  20  4KMIKVKVIGRNI---------EKEIEWREGMKVRDILRAV----------------GFNTESAIAKVNGKVVL----EDDEVKDGDFVEVIPVVSGG................ 71
23 -16.9002l32_A mol:protein length:74 Small archaeal modifier protein 2  ali model follow..  19  1MNVTVEVVG----------EETSEVAVDDDGTYADLVRAV----------------DLSPHEVTVLVDGRPVP-----EDQSVEVDRVKVLRLIKGGLE.............. 68
24 -15.4001ryj_A mol:protein length:70 unknown  ali model follow..  15  1MVIGMKFTVITD-------DGKKILESGAPRRIKDVLGEL----------------EIPIETVVVKKNGQIVI----DEEEIFDGDIIEVIRVIYGG................ 70
25 -15.1002k5p_A mol:protein length:78 thiamine-biosynthesis protein  ali model follow..  16  11.......................TVDGAESLNVTELLSALKVAQAE---------------YVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGGK............... 70
26 -14.1001f0z_A mol:protein length:66 THIS PROTEIN  ali model follow..  12  9.......................AMQCAAGQTVHELLEQL----------------DQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG................ 66
27 -13.5002lek_A mol:protein length:73 Putative thiamin biosynthesis ThiS  ali model follow..  14  1................................MLVTINGEQREVQSASVAALMTELDCTDGHYAVALNYDVVPRGKWDETPVTAGDEIEILTPRQGGLE.............. 67
28 -13.4001tyg_B mol:protein length:87 yjbS  ali model follow..  16  24...........................KDTGTIQDLLASY----------------QLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG................ 77
29 -13.2005gha_E mol:protein length:85 Sulfur Carrier TtuB  ali model follow..  15  26.......................EVEVKGNRPLREVLEEL----------------GLNPETVVAVRGEELLT----LEDEVREEDTLEVLSAISG................. 78
30 -12.9002cu3_A mol:protein length:64 unknown function protein  ali model follow..  24  3...................................WLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG................ 64
31 -12.4004hrs_A mol:protein length:67 Small archaeal modifier protein 2  ali model follow..  15  4VTVEVV------------GEETSEVAVDDDGTYADLVRAV----------------DLSPHEVTVLVDGRPVP-----EDQSVEVDRVKVLRLIKGG................ 67
32 -11.0002hj1_A mol:protein length:97 Hypothetical protein  ali model follow..  12  7INIEIAY-------AFPERYYLKSFQVDEGITVQTAITQS---------GILSQFPEIDLSTNKIGIFSRPIK----LTDVLKEGDRIEIYRPL................... 80
33 -10.3003tix_A mol:protein length:207 Ubiquitin-like protein SMT3,RNA-induced transcriptional silencing complex protein tas3  ali model follow..  17  58INLKVS-----------DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGI--------IQADQT-----EDLDMEDNDIIEAHREQIGGL............... 133
34 -9.9001wz0_A mol:protein length:104 Ubiquitin-like protein SMT3B  ali model follow..  12  25INLKVA----------GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQ------------IRFRFDGQPINETD-AQLEMEDEDTIDVFQQQTSGPSSG............ 104
35 -9.8204npn_A mol:protein length:102 Small ubiquitin-related modifier 2  ali model follow..  17  26INLKVA----------GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ--------INETDT-----AQLEMEDEDTIDVFQQQTGG................ 101
36 -9.7602n1v_A mol:protein length:111 Small ubiquitin-related modifier 1  ali model follow..  21  30IKLKVI----------GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ--------IADNHT-----KELGMEEEDVIEVYQEQTGG................ 105
37 -9.6702k8h_A mol:protein length:110 Small ubiquitin protein  ali model follow..  21  27VAVKVV----------NADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGT--------IDETKT-----EELGMEDDDVIDAMVEQTGG................ 102
38 -9.5601we7_A mol:protein length:115 Sf3a1 protein  ali model follow..  11  26VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGPAGKQKLQYEGIFIKDSNSLA------------YYNMASGAVIHLALKERSG................ 111
39 -9.5002n1w_A mol:protein length:107 Small ubiquitin-related modifier 2  ali model follow..  17  26INLKVA----------GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ--------INETDT-----AQLEMEDEDTIDVFQQQTGG................ 101
40 -9.4803vdz_A mol:protein length:111 Ubiquitin-40S ribosomal protein S27a  ali model follow..  12  26GSIDGDELLAMQIFVKTLTGKTITLEVEPSDTIENV------------KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLDYNIQKESTLHLVLRLRGG................ 111
41 -9.4701a5r_A mol:protein length:103 SUMO-1  ali model follow..  20  24IKLKVI----------GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ--------IADNHT-----KELGMEEEDVIEVYQEQTGGHS.............. 101
42 -9.4004bkg_A mol:protein length:168 SMALL UBIQUITIN-RELATED MODIFIER 2  ali model follow..  15  93..........INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP-------INETDT-----AQLEMEDEDTIDVFQQQTGG................ 168
43 -9.4002ojr_A mol:protein length:111 Ubiquitin  ali model follow..  12  26GWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENV------------KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLDYNIQKESTLHLVLRLRGG................ 111
44 -9.3005gjl_A mol:protein length:98 Uncharacterized protein  ali model follow..  17  23IQVKVR----------SPDGAEVFFKIKRKTKLEKLMEVYCNRLGQSMEAVRFLYDGD--------IHGDNT-----EQLGIEDGDVIDAMVQQTGG................ 98
45 -9.2401l2n_A mol:protein length:101 Ubiquitin-like protein SMT3  ali model follow..  15  24INLKVS-----------DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDS------------LRFLYDGIRIQADQ-EDLDMEDNDIIEAHREQIGGAT.............. 100
46 -9.2104zqs_A mol:protein length:157 ubiquitin  ali model follow..  16  72LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGPPDQQRLIFAGKQLEDGRTL------------SDYNIQKESTLHLVLRLRGG................ 157
47 -9.1802io1_B mol:protein length:94 Small ubiquitin-related modifier 3 precursor  ali model follow..  15  8..........INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ--------INETDT-----AQLEMEDEDTIDVFQQQTGGV............... 84
48 -9.1503kyc_D mol:protein length:97 Small ubiquitin-related modifier 1  ali model follow..  19  22..........IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ--------IADNHT-----KELGMEEEDVIEVYQEQCGG................ 97
49 -9.1002awt_A mol:protein length:95 Small ubiquitin-related modifier 2  ali model follow..  15  18..........INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ--------INETDT-----AQLEMEDEDTIDVFQQQTGGV............... 94
50 -9.0803rzw_C mol:protein length:99 Small ubiquitin-related modifier 1  ali model follow..  21  24..........IKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQ--------IADNHT-----KELGMEEEDVIEVYQEQTGG................ 99
51 -9.0706fnn_C mol:protein length:104 Ubiquitin-like protein  ali model follow..  14.NLYFQGHMKIKIVPAVGGGSPLELEVAPNATVGAV------------RTKVCAMKKLPPDTTRLTYKGRALKDTETLSLGVADGDKFVLITRTVGG................ 98
52 -9.0602iy1_B mol:protein length:83 SMALL UBIQUITIN-RELATED MODIFIER 1  ali model follow..  17  3..........IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR------------QGVPMNSLRFLFEGQRIADNH-KELGMEEEDVIEVYQEQTGGHS.............. 80

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24