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Query: [D] KOG4259 Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain, from COG1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPESDVTKMKVADLKRELKLRGLAVNGNKTELQDRLQTALLEGDLSLEDSAIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEEKTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDSTGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPPAVANTATAVAVAINKSSSASITANKGNKETEEQQKEALKKRAERFGFVVPDKAPTSKADDRLQKRKERFGAGAVSAATTTPTTTESKDAWSEKARARLERFKTAPSTNLast
1 -22.6002rnn_A mol:protein length:114 E3 SUMO-protein ligase SIZ1  ali model follow..  22  35...TLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDP................................................................................................................................................................................................................................................................. 82
2 -22.2002kvu_A mol:protein length:75 MKL/myocardin-like protein 1  ali model follow..  40  18...ANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQISPVPGAPKAPAA............................................................................................................................................................................................................................................................. 69
3 -20.4002do1_A mol:protein length:55 Nuclear protein Hcc-1  ali model follow..  38  6.SGVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAESGPSSG................................................................................................................................................................................................................................................................. 55
4 -19.7001zrj_A mol:protein length:50 E1B-55kDa-associated protein 5 isoform c  ali model follow..  44  6.SGMDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGPS........................................................................................................................................................................................................................................................................ 48
5 -18.6002wqg_A mol:protein length:51 PROTEIN THO1  ali model follow..  31  1.GSADYSSLTVVQLKDLLTKRNLSVGGLKNEWVQRLIKDDEESKGESEVSPQ................................................................................................................................................................................................................................................................ 51
6 -18.4001h1j_S mol:protein length:51 THO1 PROTEIN  ali model follow..  33  1.GSADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKGESEVSPQ................................................................................................................................................................................................................................................................ 51
7 -18.0001jjr_A mol:protein length:151 THYROID AUTOANTIGEN  ali model follow..  23  50ISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDK......................................................................................................................................................................................................................................................................... 92
8 -16.2002rno_A mol:protein length:110 Putative DNA-binding protein  ali model follow..  28  17.....LAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDE......................................................................................................................................................................................................................................................................... 54
9 -13.6001v66_A mol:protein length:65 Protein inhibitor of activated STAT protein 1  ali model follow..  28  11.....VMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAG......................................................................................................................................................................................................................................................................... 48
10 -12.1001jeq_A mol:protein length:609 KU70  ali model follow..  23  568ISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD.......................................................................................................................................................................................................................................................................... 609
11 -11.4004bit_A mol:protein length:161 CEREBRAL DOPAMINE NEUROTROPHIC FACTOR  ali model follow..  23  108LASVDLRKMRVAELKQILHSWGEECRAEKTDYVNLIQELAPKYAATHPKTE................................................................................................................................................................................................................................................................. 160
12 -10.9002kve_A mol:protein length:65 Mesencephalic astrocyte-derived neurotrophic factor  ali model follow..  16  10LSTVDLKKLRVKELKKILDDWGETCKGEKSDYIRKINELMPKYAPKAASARTD............................................................................................................................................................................................................................................................... 64
13 -9.9802kvd_A mol:protein length:160 Mesencephalic astrocyte-derived neurotrophic factor  ali model follow..  16  105LSTVDLKKLRVKELKKILDDWGETCKGEKSDYIRKINELMPKYAPKAASARTD............................................................................................................................................................................................................................................................... 159
14 -9.9102rqy_A mol:protein length:171 Putative uncharacterized protein  ali model follow..  16  110LSTVDLKKLRVKELKKILDDWGEMCKGEKSDYIRKINELMPKYAPKAASARTD............................................................................................................................................................................................................................................................... 164
15 -9.5701kcf_A mol:protein length:258 HYPOTHETICAL 30.2 KD PROTEIN C25G10.02 IN CHROMOSOME I  ali model follow..  28  1.....MATVKLSFLQHICKLTGLSRSGRKDELLRRIVDSPIYP......................................................................................................................................................................................................................................................................... 38
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.