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Query: [F] COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase), from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKNVMAKTNNLTIGIIGGGQLGRMLAMAAARLNHRTIVLEPQADCPAAQVCNDQIVAEYDDEKALAELASRCDVVTYEFENVPVAAAEKLSASVPVYPPAQALSASQDRLTEKRFLNGCGIPTADFRAVDSQDELEAALTAFGGKGVLKTRRMGYDGKGQRLFRGGENLTGAFAALGGVPLILESFVAFEREISIIAARFQDGTVTCYDPAENVHLNGILHTSTVPAALSDAAKAVAVQSAEKLLAALEYVGVIGIEFFVLPDGSLVANEMAPRVHNTGHWTEAACAISQFEQHIRAVSDLAPGSTDRHSDCVMTNLIGDDINDVPAWLSKKDCLVHLYGKTEARPGRKMGHVTELLHTGKALast
1 -75.900PF02222.22; Q84TI2_ARATH/198-369; ATP-grasp domain  ali follow..  32  1.....................................................................................................................SQHGIPLPEFMEISDIEGARKAGELFGYPLMIKSKRLAYDGRGNAVANNQDELSSAVTALFSRGLYIEKWAPFVKELAVIVARGRDGSMVCYPVVETIHRDNICHIVKAPADVPWKINKLATDVAQKAVGSLEGAGVFAVELFLTEDSQILLNEVAPRPHNSGHQTIECC............................................................................ 172
2 -38.600PF02786.17; CARB_YEAST/149-353; Carbamoyl-phosphate synthase L chain, ATP binding domain  ali follow..  15  1............................................................................................................DRDLFASALKDINIPIAESFACETVDEALEAAERVKYPVIVRSAY-ALGGLGSGFANNASEMKELAAQSLAPQILVEKSLKGWKEVEYEVVRDRVGNCITVCNMENFDPLGV-SMVFAPSQLSDEEFHMLRSAAIKIIRHLGVIGECNVQYALQDGLDYRVIEVNARLSRSSALASKATGYPLAYTAAKIGLGYTLPE......................................................... 204
3 -24.500PF17769.1; Q15N14_PSEA6/301-353; Phosphoribosylaminoimidazole carboxylase C-terminal domain  ali follow..  34  1........................................................................................................................................................................................................................................................................................................................SVMLNVIGCD-LPPKDMLSVPRTHLHGYMK-TPRAKRKMGHINITGNDYAE 49
4 -21.500PF07478.13; DDL_ENTFA/138-341; D-ala D-ala ligase C-terminus  ali follow..  19  1...................................................................................................................LLQTVGIPQVPFVPVLRSDVFEKCEGSLIYPVFVKPANMGSS--GISKVENREELQEALEEA-DARAIVEQGIE-AREIEVAILGN--EDVRTTLPGEVVKDVAFYDYDQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSKNELFLNELN---------TMPGFTDFSMYPLLWENMGLKYSD......................................................... 197
5 -20.200PF02655.14; O29201_ARCFU/107-251; ATP-grasp domain  ali follow..  20  1..........................................................................................................TSDKWELYKKLRG-EVQVPQ-----------TSLRPLDCKFIIKP-RTACAGEGIGFSDEVPD-----------GHIAQEFIE--INLSVSLAVG--EDVKCLSVNEQIINNFRYAGAVVPARISDEVKREVVEEAVRAVECVEGLGYVGVDIVY--SDQPYVIEINARLTTP.................................................................................... 145
6 -19.700PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain  ali follow..  14  1..........................................................................................................ARDKWKSLQLLLKAGIPVPNSLLSGGEVQAQATIPHISSPTILKTLN-GSQGIGVILAEKPQSAVSIMEAFTNISMLQQDFIEEAADIRCFVI---GDQVVATMQRIGQNGEFRANCHRGGKTEKITLSDEEKQIAIQATKAIG-LDVAGVDLIRSKKG-LLVLEVNASPGLEM--IEKTSGIDIAAEIIDYI................................................................ 189
7 -19.500PF02750.14; SYN3_RAT/192-394; Synapsin, ATP binding domain  ali follow..  2...................................................................................................SLYSVYNFCSKIKIFHSLGPEKFPLVEQTFFPNHKPML---TAPNFPVVIKLGH-AHAGMGKIKVENQHDYQDITSVVAKTYATTEAFIDSKYDIRIQKI----GSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGG-LDICAVKAVHSKNGRDYIIEVMDSSMPLIGEHVEEDKQLMADLVVSKM................................................................ 201
8 -18.700PF13535.6; C0QL65_DESAH/121-281; ATP-grasp domain  ali follow..  15  1..............................................................................................................................................LPLPFIIKPIV-GFFSMGVYKVSNIHEWGNAIEAIDPSAFIIEQCID--DEFAVDAYFNSLGEPVILNILEHVFSSDSDVSDMTSKKLIETNLKEFTEFAAKIGRLAGV-FPVHIELRRDCSGILLPIEVNPMR....................................................................................... 152
9 -15.100PF01071.19; PUR2_YARLI/108-301; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain  ali follow..  19  1...........................................................................................................GSKTFSKDFMKKHNIPTAAFENFTDYNKAVDYVKKVGHRVVIKA-SGLAAGKGVLIPTSTEEAIAAVKEVAGDEVVIEEFLE--DELSILAFSDGYTVVDMPPAQDHKNTGGMGAYCPAPIGTPALLQEIKESILQPTIDGMPFVGMLFTGIMLTPDGKPKVLEYNVR........................................................................................ 188
10 -15.000PF15632.6; W0LEM0_9GAMM/205-340; ATP-grasp in the biosynthetic pathway with Ter operon  ali follow..  13  3...................................................................................................................................................................................EPLVLMPYLP--PEYSVDMLVERGNVLAAVARRKEGALQYLEH------------HGEALELATACATAMEADGLVNVQTRNDASGHPLLLEINLRPSGGIGYTRFS-GVNLPGLFALRQLGLMSQQEVMDEAKKSFSPA............................................ 128
11 -14.300PF18299.1; A0A0C2D201_9DELT/88-254; ATP-grasp domain, R2K clade family 2  ali follow..  13  1...................................................................................................................LLHREYVLTTVAELSADPIATAGSLADASGQVFVRPDSPLKPFSGRVVQLEGHLDHGFYYERLDLPIVVSRKRSLGDEWRFVICQRSVITGCRYEAEGRVAG-------------TTTVDPRAAAVADQIAAKFVGPPVYVLDLVESEHGIEMV-EINP--SGADLYACDKPAIVQ........................................................................ 166
12 -14.000PF00289.22; Q5P6X6_AROAE/1-110; Biotin carboxylase, N-terminal domain  ali follow..  22  3...........EKILIANRGEIALRVLRACRELGIRTVAVHSVADTEAKYVADESVCISYLNVPAIISAAEVTDAYGFLSENADFAERVEQSGFVFIGPRSDTI................................................................................................................................................................................................................................................................... 110
13 -12.500PF08442.10; A2EBX0_TRIVA/11-220; ATP-grasp domain  ali follow..  11  4.............................................................................................................EWQSKEICAKYNVAAGINLVARSPEEAAEAFRKMNLPAAVIKAQTGFKSGVHFVKSADEAAKIAKEMLGHQAVMLSDPVEVKRELYFAILLDRQGGVEIEEVAAHHPEKIHKFVLDGVEGITEEVAKNISTKLGLTGKAYDNGVVEMQKLWLFVGSDATQVEVNPLAE...................................................................................... 210
14 -12.000PF05770.11; ITPK1_ORYSJ/143-341; Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain  ali follow..  2....................................................................................................................NAYGEVCTPRQLVIMKDPLSIPSAVALTLPLVAKPLV-VDGTSKSHELSLAYVETSLSML--DPPLVLQEFVNHGILFKVYVVGETNNDGIFRFPRVSCATNTAEDAEVDPSIAELPPKPLLEKLGRELRRRLG-LRLFNFDMIREHGDRYYVIDINYFPGYGK................................................................................... 185
15 -11.600PF11379.8; G7UTL3_PSEUP/30-372; Protein of unknown function (DUF3182 topsan)  ali follow..  14  16....................YFGRRL---ATLLGRPFR--QALPGLPGYFIPLDTLTCEEAAMRGITCAQDLFGGVVPHAFVASKLVSHGLVADGAGAP----------QGWAPQLGAALGDAVLPGYSVFSADDARRALAALLGKVRGKLAH-ARGGHGQRVMASQADLEAWLAQVSDAEVVIELNLESALTFSIGCVEVGGASIAYFGTQRTIGTPS--LDQLRHVPLPRHAGDAIARVQHESTIVQAYPGFFAYDVVHGRDAK--VLEQSWRFGGASPAEILALEVLCAEPEVPWL................................................................ 308
16 -9.600PF14397.6; Q081M9_SHEFN/19-293; Sugar-transfer associated ATP-grasp  ali follow..  15  12...................................................................................................QRKFYKRVDDKLITKQLALANGIAVPDLIGVVHEQHKIQEIPAMRSGFVIKPAK-GSGGKGIMVITRVSN-GLFSLGGKPDVAIVEGLIEFDPDIRLIVFKGFPVMGML-DGKANLHQGAVGVGLDIATGSSLHAVETLLHTASSAYE-MCELGYLGTDMVLDKNKGPLLLELNARPGLTIQIANGRGILPRLKHVE................................................................... 274
17 -9.500PF14398.6; D5XE97_THEPJ/198-454; YheC/D like ATP-grasp  ali follow..  12  1............................................................................................................DKFFNPKFFDKWRT-LPTTVHIQAAEAAKNFIARHS-SVYLKPSG-GSSGRGILRVRRDRNQDLLDKQMLNKKFIVQQDLNLAQDVRVLMQKGLDGKWRFTGMAARLGGSNAITTNLHGAKKAYQMQSEIEHLSFLTCSWVEQFGEIAVDVGIDNTGKIWLIELNAVPGRT.................................................................................... 232
18 -9.200PF02955.16; GSHB_SYNY3/132-305; Prokaryotic glutathione synthetase, ATP-grasp domain  ali follow..  16  1................................................................................................................EKMYTLQFAAVMPPTVVSLDKGLIRQFLEEHG-AAVLKPLG-GKAGEGILFLDPGDRLVEISTQHGKEPVMVQRFLP-EGDKRIILL---DGDPIGAVNRIPSGAEFRGNMAVGGQVAPTTITSREIEICALLKPKLQADGLYFVGIDVIGGYLTEVNVTSP......................................................................................... 163
19 -9.010PF00670.21; SAHH_DICDI/191-351; S-adenosyl-L-homocysteine hydrolase, NAD binding domain  ali follow..  11  13IKRATDVMIAGKVAVVAGYGDVGKGCAQSLSKMGARVLVTEIDPINALQACMDGY------QIVTMETAAPLSNIFVTTTGCVRGEHFAVMKEDAIVCNIGHWLNANAKKDTVKPQVDRYTLANGVHIILLAEGRLVNLGCGTG........................................................................................................................................................................................................................... 161

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.