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Query: [C] COG1038 Pyruvate carboxylase, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVLLLYSAVQQNSVLACGETVLKISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLSLHRFKADESYQVGRGPHLAKDMGPIESYLSIEEVIRVAKLSGADAIHPGYGLLSESPEFVEACNKAGITFIGPTPDTMRQLGNKVAARNLAISVDVPVVPATNPLPDDIAEVERMAEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILEGAAIGTAESGVPKQEDIRLNGHALQCRITTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYTGAVITRYYDPLLVKVTAWAPEPDEAISRMDRALREFRIRGVATNLTFLEAIIGHDSFRNNTYTTRFIDSTPELFAQVKRQDRATKLLTYLADVTVNGHPETKGRAKPADKAAKPIVPYIDAPTPDGTKQLLDKLGPKGFADWMRNEKRVLVTDTTMRDGHQSLLATRVRTHDIARVASVYSKALPQLLSLECWGGATFDVSMRFLTEDPWERLSLIREGAPNLLLQMLLRGANGVGYKNYPDNVVKYFVRQAARGGVDLFRVFDCLNWVENMRVSMDAIAEENKLCEATICYTGDLLNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGISAATVLAAVDAGVDAVDAAMDAFSGNTSQPCLGSIVEALSGSERDTGLDTEWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLESRWHEVAQAYADANRMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVENPDREVSFPDSVVSMLKGDLGQSPGGWPEALQKKALKGEKPYTVRPGSLLEDADLDAERKVIETKLERKVDDFEFASYLMYPKVFTDFALTAETYGPVSVLPTHAYFYGMEDGEELFADIERGKTLVIVNQASSGIDDKGMVTVFFEINGQPRRIKVPDRAHGASGSAVRRKAEPGNASHIGAPMPGVISRVFINQGQEVKAGDVLLSIEAMKMETALHAERDGKIAEVLVKPGDQIDAKDLLISYAELast
1 -53.400PF00289.22; Q5P6X6_AROAE/1-110; Biotin carboxylase, N-terminal domain  ali follow..  46  1......................MFEKILIANRGEIALRVLRACRELGIRTVAVHSVADTEAKYVKLADESVCIGPAQ-------SALSYLNVPAIISAAEVTDAEAIHPGYGFLSENADFAERVEQSGFVFIGPRSDTI........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 110
2 -46.900PF02786.17; CARB_YEAST/149-353; Carbamoyl-phosphate synthase L chain, ATP binding domain  ali follow..  19  1...............................................................................................................................................DRDLFASALKDINIPIAESFA--CETVDEALEAAERVKYPVIVRSAYALGGLGSGFANNASEMKELAAQS------LSLAPQILVEKSLKGWKEVEYEVVRDRVGNCITVCENFDPLGVHTGDSMVFAPSQTLSDEEFHMLRSAAIKIIRHLGVIGECNVQYALQPDGLDYRVIEVNARLSRSSALASKATGYPLAYTAAKIGLGYTLP...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 203
3 -43.600PF02785.19; Q0CM38_ASPTN/307-414; Biotin carboxylase C-terminal domain  ali follow..  36  1...................................................................................................................................................................................................................................................................................................................................................................................EARVYAENPVKDFAPCPGVLQSVEWKELPGSRIDTWV-YRGIKVSANYDPLLAKVMFHAPSRTEAIEGIRTILAGSRICGPPTNLEFLTEILGSETFASGHTLTRFLDH...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 108
4 -26.600PF02222.22; Q84TI2_ARATH/198-369; ATP-grasp domain  ali follow..  21  1........................................................................................................................................................SQHGIPLPEFME--ISDIEGARKAGELFGYPLMIKSKRLADGRGNAVANNQDELSSAVTALG------GFSRGLYIEKWAPFVKELAVIVARGRDGSMVCYPVVE-TIHRDNICHIVKAPAD-VPWKINKLATDVAQKAVGSLEGAGVFAVELFLTED-SQILLNEVAPRPH--HQTIE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 170
5 -18.200PF13535.6; C0QL65_DESAH/121-281; ATP-grasp domain  ali follow..  15  1...................................................................................................................................................................................LPLPFIIKPIVGFFSMGVYKVSNIHEWGNAIEAIRTEIDQVKNPSAFIIEQCIDGDEFVDAYFNSLGEPVILNILEHVFSSDSDVSDRVYMTSKK-LIETNLKEFTEFAAKIGRLAGVKNFPVIELRRDCS-GILLPIEVNPMRFGGWCTTD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 160
6 -17.500PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain  ali follow..  18  3...............................................................................................................................................DKWKSLQLLLKAGIP-VPNS--LSGGEVQAQATIPHISSPTILKTLNGSQGIGVILAEKPQSAVSIMEAFKQT------NISMLQQDFIEEAGNADIRCF----DQVVATMQRIGQNGEFRANCHRGGKTEKI--TLSDEEKQIAIQATKAIGLDVAG-VDLIRSKK--GLLVLEVNASPGLEM--IEKTSGIDIAAEIID.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 187
7 -16.700PF09891.9; Q5JEN4_THEKO/2-163; Uncharacterized protein conserved in archaea (DUF2118 topsan)  ali follow..  18  91............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KKGDELMILPVEGFTKTLIANVGNRVRTGDAFAAVTTRKGEHYLKPPKTGTVVFIDEITN---RPHYLYYILPE 162
8 -16.600PF07478.13; DDL_ENTFA/138-341; D-ala D-ala ligase C-terminus  ali follow..  19  1......................................................................................................................................................LLQTVGIPQVP-SDWKGNPKEVFEKCEGSLIYPVFVKPANMGSSVGISKVENREELQEALEEAFR-------DARAIVEQGIE-AREIEVAILGNEDVRTTLPGE-DYDAKYINNTIEMQIPAH-VPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK-NELFLNELNT-----------MPGFTDFSMYPLLWENMGLKYSD................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 197
9 -16.500PF00364.22; BCCP_SOYBN/186-260; Biotin-requiring enzyme  ali follow..  29  2.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PLKSPMAGTFYRSFVKVGDKVKKGQVVCIIEAMKLMNEIEADQSGTIVEIVAEDAKSVSVDTPLFVI.. 75
10 -16.000PF00682.19; LEU1_ECOLI/4-273; HMGL-like  ali follow..  18  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QVIIFDTTLRDGEQA-LQASLSVKEKLQIALALERM----------GVDVMEVGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKD---------IDVAAESLKVAEAFRIHTFIATSPMEVIERAIYMVKRARNYTDDVEFSCEDAGRT-----PIADLARVVEAAINAGATTINIPDTVGYTMPFEFAGIISGLYERVKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAMNGIGERAGNCSLEEVIMAIK-LNVHTAINHQEIWRTSQL..................................................................................................................................................................................................................................................................................................................................................... 269
11 -15.500PF02750.14; SYN3_RAT/192-394; Synapsin, ATP binding domain  ali follow..  11  2......................................................................................................................................SLYSVYNFCSKIKIFHSLGPEKFPLVE-----QTFFPNHKPMLTAPNFPVVIKLGHAHAGMGKIKVENQHDYQDITSVVAMA------KTYATTEAFIDSKYDIRIQKIGSNYKAYMR------TSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICA-VKAVHSKN-GRDYIIEVMDSSMPLIGEHVE---ADLVVSKMS.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 202
12 -14.400PF02655.14; O29201_ARCFU/107-251; ATP-grasp domain  ali follow..  14  3...............................................................................................................................................DKWELYKKL-RGEVQV-------------PQTSLRPLDCKFIIKPRTACAGEGIGFSDEVPD-------------------GHIAQEFIEG-INLSVSLAVGEDVKCLSVNEQIINNFRYAGAVVPAR----ISDEVKREVVEEAVRAVECVGLNGYVGVDIVYS---DQPYVIEINARLTTP................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 145
13 -14.200PF01071.19; PUR2_YARLI/108-301; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain  ali follow..  19  1..............................................................................................................................................GSKTFSKDFMKKHNIPT--AAFENFTDYNKAVDYVKKVGHRVVIKASGLAAGKGVLIPTSTEEAIAAVKEVMQDKAFGEAGDEVVIEEFLEGD---ELSILAFSDGYTVVD----MPPAQDHKRIGDYCPAPIGTPAIKESILQPTIDGMRRDGIPFVGML--IMLTPDGKPKVLEYNVRF................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 189
14 -14.100PF02436.18; F7ETH0_MONDO/860-1059; Conserved carboxylase domain  ali follow..  42  1......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VYENEIPGGQYTNLHFQPYSMGLGTKFKEVKKAYVRGNQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRADVEAKAEELSFPRSVVEFLQGYIGIPYGGFPEPFRSKVLKDLPRVEGRPGASMTALDLRKLEDELKER-NDEITPEDVLSAAMYPDVFQQFKDFTATFGPLECLNTRLFLQGPKVAEEFEVELERGKTLHIK....................................................................................................................... 200
15 -11.000PF15632.6; W0LEM0_9GAMM/205-340; ATP-grasp in the biosynthetic pathway with Ter operon  ali follow..  18  3...............................................................................................................................................................................................................................EPLVLMPYLPGPEY-SVDMLVER-GNVL------AAVARRKEGALQYL-------EHHGEALELATACATAMEADGLVNVQTRNDAS-GHPLLLEINLRPSGGIGYT-RFSGVNLPGLFALRQLGLMSQ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 114
16 -11.000PF11379.8; G7UTL3_PSEUP/30-372; Protein of unknown function (DUF3182 topsan)  ali follow..  11  6......................................................RARHECASVEYFGRRLATLLGRPFRDQALPGLPGYFIPLDTLEEAAMRGITCAQDLFGGVVPHAFVASKLVSHGLV-------ADGAGAPQGWAPQLGAALGDAVLPGY--SVFSADDARRALAALLGKVRGKLAHARGGHGQRVMASQADLEAWLAQVSDAEIAD----GVVIELNLESALTFSIGCVEVGGASIAYFGTQRTIGTPSGEVVLDQLRHVPLPRHAGDAIARVQHESTIVQAYPGF-NYDVVHGRDAKGIEVLEQSWRF----ASPAEILALEVLCAE-WLDAMTYETYEDEPVPGDALVYFQD---------QV------ASLGRLTKY............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 342
17 -10.800PF02955.16; GSHB_SYNY3/132-305; Prokaryotic glutathione synthetase, ATP-grasp domain  ali follow..  17  1...............................................................................................................................................EKMYTLQFAAVMPPTVV------SLDKGLIRQFLEEHG-AAVLKPLGGKAGEGILFLDPGDRNFNSLVEISTQH----GKEPVMVQRFLPEAKEGDKRII----GDPIGAVNRIPSGAEFRGNMAVGGQVAPTTTSREIEICALLKPKLQADGLYFVG-IDVIGG------YLTEVNVTSPTGIREIDRLEG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 174
18 -10.400PF05770.11; ITPK1_ORYSJ/143-341; Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain  ali follow..  10  1......................................................................................................................................................SNAYGEVCT-PRQLVIMKDPLSIPSAVAKLTLPLVAKPLVVDGTSKSHELSLAYVETSLSML----------DPPLVLQEFVNHGILFKVYVVGETIRVVRRFSLPDVNIYDLENN--AEVDPSIAELPPKPLLEKLGRELRRRLGLRLFN-FDMIREHGRDRYYVIDINY--GYEHIFIDFLLS....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 199
19 -9.350PF05088.12; A4XWG7_PSEMY/77-1608; Bacterial NAD-glutamate dehydrogenase  ali follow..  11  675....................LDLIKATLRTNKSYFSFKLSPR-RPVPKFEIFVYS-PRVEGVHLRFGDVA---GLRWSDREEDFRTEVL----GLVKAQQVKNAVIVPMG-GFVGSRDEVMAEGIACYRIFI----SGLLDITDNLKEGEVVPPVNV-VVAADKGTATFSDIANGIAAEYGFWL--DAFASGGSAGY----DHKGMGITAKGGWVSVQRHFRERGIDVQK--------NVTVIGDVFGNGMLLSDKLQLVAAFNHMHIFIDPNPDAAKSFAERKRLFDLPRSSWADYDSEGGGIFLRSAKS-----ITITPQMKARFDIADKLAPTELLNALLKVKSSKE-SHADVGDKANDALRVDGRELRAKVVGEG-GNLGMTQLGRVEF--GLHGGASNTDFIDNAGGVDCSDH--EVNIKILLGEIVSGGDMNKLLAEMTDDVSELVLGNNYKQTQALSLAERRA----RERVGEYKRLMNALESAGKLDRALEFLPS--------------------------------------------EELNERATNGQGLTRPELSVLISYSKIDLKESLLKSLVPDDDYLAREMETAF--------------------PEILTEKFGDAMRRHRLKREIVSTQIANVNHMGITFVQRLKESTGMSAANVAGAYVIVRDLFRLPHWWAQIEALDYKVPAELQLQLMDELMRLGRRATRWFLRSRRNELDAARDVAHFAPRIEALVGRLDELLEGPAREQWLARYQSFVEAGTPEELARVVAGTSHLYTLLPIIEAADVTGKDASEVATAYFAVGGA-----LELSWYLQVETNWQALAR--EAFRDDLDWQQRAITVSVLQMAEGPQEIEARVALWLEQHHRLVER----WKAMLTELRSATGTDYAMYAVANRELMD................................................................................................................................................................................................................................................................ 1532

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205