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Query: [C] COG1145 Ferredoxin, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHHSHHLEIYEKLREKLNKAPIGLPKTVSGVEKELLSVLFDEEEAKIAVHMPFIRFTAEQLAERTGKSLEYVEKILNEMAKKGTVWKGEKDGQTYYRLFPVIVGFAETPFWPGPGKDPRQEKLARLWSQYRKEGFLDEIGDREHPIMRALPERDTISEKSEILPYEDAVKLVKERDYIAVGYCPCRVMARLVGEGCRHSIENCIHMGSVGKYMVEHGLGRRISADEAIEILRQSNREGLVHLTERSKHVATICNCCSDCCVFFKAVHEAKHPNTIAHSSYLATVDTSRCIACGICMLRCPMKAIKAKINREPASVDAEKCLGCGVCVPTCPMEAIELVERDELLELPDGMTYVQELLADKGRDPSGLFLast
1 -42.300PF04015.12; B8E3B5_DICTD/41-314; Domain of unknown function (DUF362 topsan)  ali follow..  15  17................................................................................................................................................RPVFVRQAVEAVRELGGKPFLTDANTLYKGGRANAVDHLESAIYNGFGYSSVGAPLIIADGINGDYYKEVEVNLKHFKKIKVAGAIYDADFLLVLTHVKGH------MSAGLGGAIKNVGMGCAPRSGKQMQHAQFKPNPNPNLCIGCRRCVDHCPTGALEMVDK-KSKLTRPELCIGCGECAVVCPTSAIKILWNESAIGLQEKMVEFTYGILKQKEPKYAFI 233
2 -22.200PF14697.6; D7CUR2_TRURR/338-410; 4Fe-4S dicluster domain  ali follow..  28  1.........................................................................................................................................................................................................................................................................................ARIDPAKCIHCNLCFVACDEGAHQCGPAKTQPVVREDDCVGCNLCSLVCPVGCITM............................... 73
3 -18.800PF05187.13; Q2KY29_BORA1/438-540; Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S  ali follow..  16  26..................................................................................................................................................................................................................................................................................LTLKNPDIPVEVNLATYGGPEARYCPAGVYEFDHGADRLQINAQNCVHCKTCDIKDPKQNIVWVAPQG.......................... 96
4 -16.500PF13746.6; D0L1X5_HALNC/211-324; 4Fe-4S dicluster domain  ali follow..  20  50.....................................................................................................................................................................................................................................................................................LDERHAAGTGDCIDCKLCVQVCPTGI-------DIRDGLQLACISCGLCIDACNEIMHKRGWPEGLIRYASE................... 114
5 -14.800PF13247.6; C6BUH5_DESAD/66-169; 4Fe-4S dicluster domain  ali follow..  15  10............................................................................................................................................................................................................................................................CRHCIEPPCKYIANMYTPGSVVQDEKTGAVVMTDKAVIGKLESWELCPYNVPRQDKKTGLW----SKCDMC-ACVQSCPTGTMNFGDR............................ 104
6 -14.500PF17179.4; B6YU82_THEON/232-326; 4Fe-4S dicluster domain  ali follow..  34  1...............................................................................................................................................................................................................................................................................................KCFACGNCSTVCPTDSCKFRSHGLVATLGINFCVGCGRCTAFCPAGI.................................. 95
7 -14.100PF13237.6; D3QZB0_MAGIU/369-428; 4Fe-4S dicluster domain  ali follow..  31  6............................................................................................................................................................................................................................................................................................PETDCIRCGRCSQHCPMNTVKFQKYAALSATGVMNCIECGSCAYECP..................................... 60
8 -12.900PF13534.6; A9KMI5_LACP7/255-319; 4Fe-4S dicluster domain  ali follow..  28  2................................................................................................................................................................................................................................................................................................CRGCGYCMP-CPAGI-QLTSEAQQKMKKIEDCIHCNQCKAKCPYGL.................................. 64
9 -12.900PF13183.6; A6Q0W9_NITSB/128-201; 4Fe-4S dicluster domain  ali follow..  30  1............................................................................................................................................................................................................................................................................................KQSDCILCQSCYSSCPIDAREEEKKEHIDAVVRNDCTLCGNCTIVCPQGI.................................. 74
10 -12.900PF13187.6; D3T9L1_ACIB4/137-190; 4Fe-4S dicluster domain  ali follow..  27  1...............................................................................................................................................................................................................................................................................................RCVSCNTCTKACPQELDGIRGDIAKVAELSFDCIQCGLCTLRCPAEI.................................. 54
11 -12.700PF12838.7; A4YE92_METS5/577-626; 4Fe-4S dicluster domain  ali follow..  26  2................................................................................................................................................................................................................................................................................................CVKCETCAEACPVGNTDLPGNFRSGQFKSMRCIGVGDCAEACPYN................................... 49
12 -11.800PF13484.6; Q0VME1_ALCBS/189-253; 4Fe-4S double cluster binding domain  ali follow..  34  1...............................................................................................................................................................................................................................................................................................HCGKCKACITVCPTDAIV-----APYELDARRCIGCDDCQLMCPWN................................... 65
13 -11.300PF13459.6; C7PVU8_CATAD/14-85; 4Fe-4S single cluster domain  ali follow..  23  1.........................................................................................................................................................................................................................................................................................VWIDHDLCTGDGICAQYAP-DVFELDIDGARVPVPSDLVLAVIDSAKECPGECIHV............................... 72
14 -10.100PF06902.11; Q12YH8_METBU/78-141; Divergent 4Fe-4S mono-cluster  ali follow..  20  1..................................................................................................................................................................................................................................................................................YVGKYITIHRDRYVCSHVGHCIRNLP--SVFKKGREPWADPDAADPEEIAKLIRTCPSGALSYTVN............................ 64
15 -9.770PF15913.5; H2MI93_ORYLA/41-153; Furin-like repeat, cysteine-rich  ali follow..  23  10............................................................................................................................................................................................................................................................................................EYNGCVKCGVCLASCPVGYFGMRNPEGNNRCNRNFCTKCGRCYVSCPPGQRT................................ 97
16 -9.390PF04885.13; M4CFF0_BRARP/12-161; Stigma-specific protein, Stig1  ali follow..  18  88.............................................................................................................................................................................................................................................................................................NNKCMNCGACKNKCKFGQTCCRGQCVYVAYDKRHCGECNRCNLLCVYGLCNYA.............................. 150
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;