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Query: [P] COG3067 Na+/H+ antiporter, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEISWGRAMWRNFLGQSPDWYKLALLVFLIVNPFIFLANPFIAGWLLVAEFIFTLAMALKCYPLLPGGLLAIEAVIIGMTSAAHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRLLLSIRSKMVLSLAFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVEKMRWFGYGETLPEKVRDVLQQFDDQSRKKRTRQDKIKLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATALTGVTDEHAIGKAFTESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQASEHAQLTLFYLFNGLLSSISDNVFVGTIYINEAKAAMENGAISLKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLIGLLCVEFTLAPATEWMTQAGWLATLSLast
1 -85.400PF02040.15; YDFA_BACSU/6-428; Arsenical pump membrane protein  ali follow..  14  3.............................................VFIFLLTLVLVIWQNLSIGWSACGGAVLALIAGVVNFHDVVTGIVWNATLAFVAIILISLILDNIGFFEWAALHMAKAAKGYGVRM-----------------------------FVYVSLLGAIVAALFANDGAALILTPIVLAMVRALHFNEFPFIIASGFIADTTSLPFVVSNLVNIVSADYFHITFIDYASRMVVPYLFSLLASIIVLYLFFRKSIPKRYDLTEV------KKPVEAIKDQNMFRLSWYILGLLLIGYFASEFFSIPVSVVAGSIAIIFLIAAQKPAVHTKKVVKEAPWAIVFFSIGMYVVVYGVRNAGLTDVLSDVIQAAADQGLFAGTIGMGFIAAILSSIMNNLPTVMIDALAIAGTDT----HGMMREALIYANVIGSDLGPKITPIGSLATLLWLHVLSHKGMKISWGTYFKTGIILTIPTLLITLVGLYIWL................. 423
2 -74.100PF06450.12; NHAB_SHEON/1-520; Bacterial Na+/H+ antiporter B (NhaB)  ali follow..  66  1MPMTMSQAFIGNFLGNSPKWYKIAILSFLIINPILFYVSPFVAGWVLVLEFIFTLAMALKCYPLQPGGLLAIEAVAIGMTSASQVLHEIEANLEVLLLLVFMVAGIYFMKQLLLFAFTKMITKVRSKILVSLLFCLASAFLSAFLDALTVIAVIITVAVGFYSIYHKVASGKDFSAENKNEEGEDQLNEAELESFRGFLRNLLMHAGVGTALGGVCTMVGEPQNLIIAAQANWQFGEFAIRMSPVTVPVFIAGILTCYIVEKFRIFGYGAQLPDAVHKILCDYDAHEDARRTNKDKMKLIVQAFIGVWLIAGLALHLASVGLIGLSVIILATAFNGITDEHALGKAFEEALPFTALLAVFFSVVAVIIDQQLFAPVIQWALNHEGNTQLVIFYIANGLLSMVSDNVFVGTVYINEVKAALLNGQITRDQFDLLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLSIVGVMAIQIFLEQMTQYFYDSHAILH.. 520
3 -71.900PF16980.5; R5EG24_9BURK/28-471; Putative citrate transport  ali follow..  13  13.................................................................AGILLSIALGPL---KVALMWAVLAAVPLFMFFGTQTSVEALAHALIGDYVP--------------FIIFVGSLYIVAGGIHLRGSFVGKPWLNTTF-LLSGAILANLMGTTGAAMLLIRPL-LNANRRRHYQMHTYIFFIFIVANIAGSLTPLGDPP-LFLGFLRGVTFFWTAGHLWEVTGLAVGLLLIIYFLLDTWLYKKELKDNEELKKPVAYVPFGFEGSVNFCIVGAVLMSGFWKTGVEYHFLGLHIALESLIRDAIFVTAAILEANQFSWEPILEVGKLFFGIFVTIVPVLEMLRAGSSGAFAPVVALVTGPDGQPVNAAYFWLTGMLSSFLDNAPTYLAFFNLAGGDPAYLMTTG---AHTLMAISMGAVFMGAMTYIGNAPNFMVVSIVQNRGVKMSFFGFMAWSYGILVPIFLVLTWLFL.................... 444
4 -35.200PF03600.16; F0JBZ6_DESDE/16-547; Citrate transporter  ali follow..  11  1....................................................VLLFIFEWVRVDVVGIIMMVLLPLLGLVTPQQAISGLSSNAVVSIIAVIIIGAGLDKTGVMNSMARVILRFAGKSESRIM-----------------------------TLIAGTVALISGFMQNIGAAALFLPAAKRIGNQTGVPVGRLLMPMGFCAIIGGCLTLVGSSPLILLNDLMVVGGKKYLFSVTPVGLLLVAAALLYFILLGRFILPNRSEDESSGPMSSILTGTYNNVELLRTDKAKIALMWLAVSLVMILGFHVQLSIALLTGALGMVLTKVL---TIDEAYQSVDWMTVFLLGGLIPLGMAFENTGAAKFIADTIMAALGTSALVLLAVIGVLTSFFTLVASNVGATVLLVPLSMNMALNAGVDP---RVAALTVA............................................................................ 532
5 -34.800PF00939.19; CITT_ECOLI/5-486; Sodium:sulfate symporter transmembrane region  ali follow..  13  33........................YFAVFVAMIVGMILEPIPAT--AISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFM-----------------------------GKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEI-----THSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVP----DITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQ--LCILLVLSIGIMGCLTPYATGPGVIIYGCGY-----VKSKDYWRLGAIFGVIYISMLLLVGWPILAMW.............. 482
6 -14.100PF03606.15; Y594_HAEIN/12-505; C4-dicarboxylate anaerobic carrier  ali follow..  10  86..........................................................QRVEQHHKGIEDITKSMVEGTIEAV--------DVMVFIFVLGGMIGVINRTGSFNAGLMALVKKTKGNEFFIVFC-----------------------------VSVLMVLGGTTCGIEEEAVAFYPILVPVFLALGYDAIVCVGAIFLAASMGTAFSTI-NPFSVVIASAAGIQFTEGIGFRALGLVLGATCVIAYLYWYCKK-TYDDREEFRQRYMKNFDPNTTIPFSARRKLILTLFCISFPIMIWGVMVGGWWFPQMAASFLAITIIIMFISGLSEKDIMESF---IIGLARGVNLV---LEQGMISDTILDYMSNVVSGMPGSVFILGQLVVFIFLGLISSSGLAVLSMPIMAPLADSVGIPR---DIVVSAYNWGQYAMLFLAPTGLVLVTLQML-------QIPFDRWVKFVMPMIGCLLLIGSILLVV................... 491
7 -13.800PF07399.11; I3U8R4_ADVKW/4-422; Putative Na+/H+ antiporter  ali follow..  13  4........................................LIATVLFAIAIVHTFSVPFFARRAHRGGPHSGLWHAFSEVEA-GLWAAILIIFMGVTGGLESAVKYMDSRNFTEPLFVFAIMVVAASRPIL--------MVGTTVRYLARVLPLQTSIATFFLTLTLVPLAGSFITEPAAMTLAALLLHSSHTRFKYMAVGVLF---VNISIGGVLTSYAAPPVLMVASSFGWDTVYMATHFGWKAALAVVINASVLTFLMRKELVVAGEHANEQTRSNSDERA-----------PIPWFVILIHLAFLASIVIFAHHPAMFMGLMMLFVGYCSAYEHYQDKLMIKEALMVAFFLAGLIVLGGLQQWWLQDLLAGL-----------SPAMLYWGATALTAITDNAALTYL-----------GSLVEGTNELWRYMLVAGAVTGGGLTVIANAPNPAGFSILKGPDEAISPKYLLLAALVPTLVAAAM.......................... 417
8 -13.500PF07854.12; Q8R782_CALS4/2-340; Protein of unknown function (DUF1646 topsan)  ali follow..  15  1....................................................................VTALVVILVLILLLPFVVKQVEHNLEYFLFTMGIISVIVSKQFSVELFFHIFKNPL---IYYITLAVLIAGLIEKLKIGVEKVADKISLRLFAFIIIVILGLMSSIITAIIASLVLVEV-VNYLPLTRKNKINLIVIACFSIGLGAALTPVGEPLATIVVSKLHADFF-YLARLIGIEIIIAILALGLIGTFFAKRESGIGEPTED--------------------------------------------------------------VEADENIREVFIRAFKVF--VFIFALELLGTGFKPIIDLYIVKMKSE--------ILYWVNTISAIVDNATLAAA------------EISPSMTPEQIRAILMGMLISGGMLIPGNIPNIISAGK-----LKIKSTEWARIAVPLGAILLIVYYIVLFV................... 338
9 -10.800PF07158.11; Q8P4U0_XANCP/1-149; Dicarboxylate carrier protein MatC N-terminus  ali follow..  14  8.............................................ILGLVIMFIVATALPINMGAVAFALAFIIGVWVGLDGKEVLAGFPGDLFLTLVGITYLFAIAQKNGTIDLLVHWAVRAVRGRIVAI-----------------------------WVMFVITGLLTAFGALGPAAVAIIGPVALRFAKQYRINPLMMGLLVIHGAQGGG............................................................................................................................................................................................................................................................................................................ 149
10 -10.500PF04165.12; O29978_ARCFU/17-405; Protein of unknown function (DUF401 topsan)  ali follow..  12  7..............................................LLFSIAVVLILIRKVNIGLAIFVGSAILAYL-LVMLKSLANPQTIEIVVIVILAFTLGYSMEYFGMLEKVTGGLSESFGVYSFLLIPLLI------------------------------------GLLPMPGGALISAVMLGPLTKMYRISPEKATLLNYWFRHVWVTFWPL--PSVIIGAAVVNVDYFHFAAATFPIGVFALTAGLTLTR-----------------------GMERRFRVSRNLFDSLINLYPIAILLILSVLLRLDLLLALVVAIAAVSIHNRAKLEDFREIFRTVDKKIILLVFAVMVYKSVIQNSGAAESLFTDIS-----LGFPAPAAAFLLTLLVGFATGEMSYSSIALPLLTSFTGSGIVVAKNLMLVIAAGYIGVML--------SPMHLCYILTAE---FGTEIGKTYRQLLAIAGITAALVWIAYLV................... 388
11 -9.980PF02667.14; ATOE_ECOLI/1-440; Short chain fatty acid transporter  ali follow..  11  21..................................................LIFAMLL------TLLTFVIALWLTPQTPISMVKMWGDGFWNLLAFGMQMALIIVALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVIFGLVVGAMFAREVARRVPGSDYPLLIACAYIG-------------------------LTWGGGFSGSMPLLAATPGNPVEHIAGLIP---FSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPKLLMEEADFQKQLPKDAPPSERLEESRILTLIIGALGIAYLAMFNITINTVNLMFMIAGLLLHKTPMAYMRAISAAAR--QFPFYAGIQLM---MEHSGLGGLITEFFINVA--NKDTFPVMTFFSSALINFAVPS---WVIQGPFVIPAAQALGADL---GKSVMAIAYGEQWMNMAQPFWALPALAIAG--------LGVRDIMGYCITALLFSGVIFVIGLTLF.................. 440
12 -9.490PF03806.13; Q5F721_NEIG1/11-519; AbgT putative transporter family  ali follow..  11  9.............LGNMPH----PVTLFIIFIVLLLIASAVGA--------YFGLSVPDPRPVGAKGRADDGLIHVVSLLDADGLIKILGFAPLGTVLVSLLGVGIAEKSGLISALMRLLLTKSPRKLTTFMVV-----------------------------FTGILSNTASELGYVVLIPLSAVIFHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDQAAQIIHPDYVVGPEANWFFMAASTFVIALIGYFVTEKIVEPQLGPYQSDLSQEEKDIRHSNEITPLEYKGLIWAGVVFVALSALLAWLKSIVVFIFLLFALPGIVYGRITRSLRGERAESMSTLGLYLVIIFFAAQFVAF--FNWTNIGQYIAVKGAVFLKEGGSVLFIGFILICAFINLMIGS---WAVTAPIFVPMLMLAGYAP---EVIQAAYRIGDSVTNIITPMMSY--GLIMATVIKYKKDAGVGTLISMMLPYSAFFLIAWIALFCIWVFVL.............. 497

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.