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Query: [O] COG3175 Cytochrome oxidase assembly factor, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGTLast
1 -87.000PF04442.14; G4QNV2_GLANF/60-203; Cytochrome c oxidase assembly protein CtaG/Cox11  ali follow..  38  1..........................................LVPLYDVFCDLTGINGKTSNEAAVYESVIIDESRTIKVEFITRTHSGMPWEFRAQTAEVAVHPGEMSEVAFYVRNPTDRDIIAQAIPSVSPGTAALFVNKTECFCFKHQPLKAGEEALMPMKFYVDPQLPKDITVFTLQYTLYD................ 144
2 -11.300PF07610.11; F0NZP4_WEEVC/51-148; Protein of unknown function (DUF1573 topsan)  ali follow..  14  12.....................................................................................................DVKMNESKDHYFVITNEGKSPLVIKDA-------------RATCGCWPKEPIPAGGKDSIKVQFTAGTVLGNTQKKVSL...................... 81
3 -10.700PF10633.9; Q67M97_SYMTH/263-339; NPCBM-associated, NEW3 domain of alpha-galactosidase  ali follow..  22  1......................................................................................................AVAGRKNGVTLEVKNTGTTEITGINFASTLPPNWTATFSPDS------DALAPGESRQVTVEVTPNSKALAGDYLVTLRAR................... 76
4 -9.650PF16729.5; R6HDW6_9CLOT/35-157; Domain of unknown function (DUF5067 topsan)  ali follow..  1..............................................................HSQSSSEDNTVEPEPKATQEESGTIGDFKVSIENAEVTTSKKGKKALLVTYAFNNGSDKTVRFADVLSAEAYQNNTACLQA-----MLTELKPGETKNVYEAYLL-----QDDSDVTVRVC................... 122
5 -8.870PF03896.16; B0XFI4_CULQU/3-291; Translocon-associated protein (TRAP), alpha subunit  ali follow..  3........................LIFALLVLPAVLLTVDGGSRLMAHAAEDELDEELDVEVEGEDASVTGQAEETETDDEPETTKSPDADTFLLGSGSQFELPAGYPVEFLVGFANKGSDDFIVETVEA-YPMDFNYFIQNFSAIAY-NREIKPGHEATVSYSFLPSESFAGRPFGLNIALNYRDASGN............ 177
6 -8.130PF12389.8; Q8ENF4_OCEIH/2-208; Camelysin metallo-endopeptidase  ali follow..  1...................KLKKKLGMGVATAVLGLGLIGGGT---FAYFSDTAQATGEFTAG-----------------ELSLSAEPSVVIDVN------NLKPGDTMIRSFELLNDGTLDISKVDISTSYVVDDVGGNNSED----SGLEAGTSDEMLVSFEFVENGADQNEYQKDSLNLTWFTGHQTEGEA........ 207
7 -7.980PF16781.5; H6NJD8_9BACL/56-244; Domain of unknown function (DUF5068 topsan)  ali follow..  11  23.........................................................GNVEVVYTNKAPGYTHNMNGFKVSVD---------KVTGMNKRVA-TDGYVVTAKVTIDNAAGKAMYYNNMYRIQLSKATDYIPNDGSATFETSKFAAGEKVTGLLSFTLTNEQFESLKTVKPKFV................... 163
8 -7.880PF00699.20; URE2_ACIAD/3-100; Urease beta subunit  ali follow..  11  1..........................................................................................PGEVITPEGDIELNVDRP-TLKVSVANTGDRPIQVGSHFHFAEANDALQFDRGLTKGYTAVRFEPGQSRDVELVALSGKRQVYGFAGRV....................... 95
9 -7.670PF11611.8; A4J6Q2_DESRM/57-186; Domain of unknown function (DUF4352 topsan)  ali follow..  16  37.........................................................................................................EQFLLVKIKVTNNDKEARIDTNLFKLFDTQGKEYSAMGEADLYVNNQVNPGMSRSGFIVF----EIPKGMQGLTLQCS................... 118
10 -7.630PF05753.14; Q9VUZ0_DROME/9-186; Translocon-associated protein beta (TRAPB)  ali follow..  13....................................................................................EDETRARLLVSKQILNKYLVEKSDLLVRYTIFNVGSGAATKVRLVDSGFHPEA--FDVVG---AVVDRIAPQTNFTHVLVVRPKAFGYFNFTAAEVSYKAVEESETLQLAVSSE.... 125

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.