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Query: [S] COG3216 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGGLast
1 -76.000PF09835.9; C7LRN6_DESBD/9-156; Uncharacterized protein conserved in bacteria (DUF2062 topsan)  ali follow..  20  1.............................ARLSRYSYLRVVRIKAPAESIALGLALGVFAGALPFLSLQMAIAVALAFVMRGNIIAAALGTWWSNPFNWALIFPLLYMLGKVFVPVDVAHLSIHEFLN--LPLLELLQRSWKWLLITTLGGFIAGIPLAMITYFVTLRAVLIYHDRRAK.............................. 148
2 -10.400PF11168.8; Q6LHL8_PHOPR/1-138; Protein of unknown function (DUF2955 topsan)  ali follow..  11  2................................................RIWFGCVAGFVLTQIDQWNSGILIQLVLGIVWVSIQVTFIVGFFQPYPVLMTLAVGILLMAKCIAMTHKSSYLFGYTGLLIGSILLNFGSFNSFDIEEFVMGLWASALVTAPIVAMA............................................ 138
3 -10.300PF02535.22; ZIP1_ARATH/48-352; ZIP Zinc transporter  ali follow..  11  156.......................................VLEIGIVVHSVIIGISLGA--------SIDTIKPLMAALSFHQFFEGLGLGGCISLTVLMATFFSVTAPLGIGI-----------------LGMSSGLGYRKESKEAIMVEGMLNAASAGILIYMSLVDLLATDFMNPRLQSNLWLH....................... 287
4 -10.200PF11457.8; R5QCL0_9FIRM/6-147; Protein of unknown function (DUF3021 topsan)  ali follow..  8  2...............................................LRGLFGLPVGIAIG--------FVITLLISICIGDGSFYPVTPELIGNELNAVVLQTILC-LGVGFAMASVIWEIDSWSLAKQSGVYFLIISVVMLPIAYFANGVLSYVGIFVMIFAAVWISQYLLWKRRIKKMNAR......................... 141
5 -9.910PF10710.9; E6U1D2_BACCJ/1-133; Protein of unknown function (DUF2512 topsan)  ali follow..  8  4......................................................................VIALLIKFGFVSLVLLSTLTFFISWILFAAFIAIPAYVIGDLLIRYGNFIASLADLGLYSIVLWLLNVTVMDGIVPTLGFALLAAFFISFLEAIYHEFVLVKAFNMKKGTMFSPPQFSTEFAED............... 133
6 -9.840PF01758.16; P73938_SYNY3/12-198; Sodium Bile acid symporter family  ali follow..  10  53................................................SLSPELAVGLMIAACP------STSNVITYLLKGNVALSITLTAISSLVTIITIPLVVNLAANYFMGEQFALQLPFLKT--------VLQIAVITIIPVSLGMIF........................................................ 146
7 -9.050PF07543.12; G9NFF0_HYPAI/33-160; Protein trafficking PGA2  ali follow..  12  16.........................................................................................................................................................LRLIMVVCTYLLIRPHIIKYSTKHAVKKLEEQDVKDKKFAEDQVAKMSPNDLRGL. 70
8 -9.030PF13593.6; Q7CIJ9_YERPE/10-319; SBF-like CPA transporter family (DUF4137 topsan)  ali follow..  17  87.................................................LTPTLYLGFYLCALP----TVQSAIAYTSVAGGNVAAAICSASASS---ILGVFLSPILVGMLMQTQGGDTDTLHA----------IGSIIMQLMVPFVVGHLS........................................................ 175
9 -8.860PF16082.5; D0IZ12_COMT2/1-76; Bacteriophage holin family, superfamily II-like  ali follow..  17  35......................................................................................................................................................IGILGLAVAIIGA-----LVNWYYKREANRRAVAQADLNREEQLLR............. 75
10 -8.670PF03896.16; B0XFI4_CULQU/3-291; Translocon-associated protein (TRAP), alpha subunit  ali follow..  14  88................................................ELPAGYPVEFLVGFANKGSDDFIVETVEASFRYQNFSAIAYNREIGHEATVSYSFLPSESFRPFGLNIALNYRDASGNQFSEAVFNETVSIIEVLDGETFFLYVFLAAVVVLLLVLGQQFLGSYGKRKRSPAKKIQNSPKGGKVSPKQSPRQRKAKRAVGD 288
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;