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Query: [S] COG3463 Predicted membrane protein, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSLIDKKLLVIIFIAYTFIIFKTCLVLYENFSYKSLDLGIFSQSLYSTLNGKFMYNTVEAQLYSAPNHFAVHFQPILLLLLPVYAIMPSPVVLLLIQAIFLALSATLALLIACEELNHREAILVASLYIFNSSLLGIALFEFHPVSLAVPLFFIAYMLLKRGKMKLFYLTSVLILLTKEDSFLGVVSLSLWKILMDGLNPESFRKNRGLILLSIASMMYGIIVIKVVIPHLGMGYIYESLYSEFELTRRKLLYFIVFNASFGFLTFLSSKGLVSVALPWLESMLSSRDTQTMIGFHYPYMLLPLSYLVAIEGFKKSKKVAVSLIVAGILTSMATIPITFKPPKAENPLIHFAVLKPIPGKDASWEAITIVKTLEGPIYTQPEFYPHLSTRIDVYVYPKGIKPRVILVNLNTWNGKRAIKRLKDFRIKLEEYKTVFKKDGVVIFIRKALast
1 -101.000PF09852.9; Q10XG3_TRIEI/32-516; Predicted membrane protein (DUF2079 topsan)  ali follow..  18  1...........................RYYSFYA-SYDQGIFNQVFWNSMHGHFFQSSLSSALSTYYHRLGQHFTPALLLWLPIYVLFPYPITLTVLQVTLISVSGLVLYILARQHLQPQLSAMMSISFYGANAVIGPTLANFHDICQIPLFVFSLLLAMEKRWWSLFWILAVLTLAVREDSGVVLFGVGFYLILSKRYPKIGLAICTLSFSYMIALTNLIMPVFSEDISQRFMMERFGQYTEGDQASTGTLKYLLGQWLPLAFVPAVAPAAWMIAGFPLLKLFSAKGLSVLSITIRYAMTVVPGLFYGAILWWGKRESEVKNSLSLFFTFTSNPNRTFYFLVPDSVKPWVYIPANEQWQHVSQMRPLLDKIPDDASVAATTYIIPHLSSRRAILRFPRIEKVQYIIVDLWRLNRYETIVPRIEELYNSGEYGITDFGDGVVL..... 485
2 -18.300PF15971.5; D2RW44_HALTV/57-219; DolP-mannose mannosyltransferase  ali follow..  10  10.......................................................................DVNPPVPFAITAALAVLSGGNMYVILTLLVAAANILLVGWVAFLVTGEDAAAVAALTMLVVPELFLLPLAGVWAQFYALFFGVLSLALALRDRPFLAGVAAALSAGSWQSGIAFAPLVVGMTYQRTGGKDVLRAIAGGGVVTGVVVL...................................................................................................................................................................................................................................... 163
3 -13.500PF13231.6; Q2YBZ2_NITMU/191-351; Dolichyl-phosphate-mannose-protein mannosyltransferase  ali follow..  10  1.......................................................................DHPPMVAWLIWLGTSIFGSEFGVRVGAFLCGLITMGYLFALTRNLYDSATGIRAVLLLAILPFFFATGALDAPLVAAWAATLYYLEQALIAQRERAWLGVGILGILSKYTLGLVGIAALVFVIIDPVARR....................................................................................................................................................................................................................................................... 137
4 -13.200PF10131.9; R5JZI7_9CLOT/75-690; 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein  ali follow..  3........................................................................YWGPLSYYIMAGLMFLTSGDLLRLIAFVIFVVGGLPWILWGIHENRRVLGTFFGVLWFFMPYFTAGNLPQMVTTMLV-PYVIWFLWLYVRKKNNRAAVGLFVCMTL---MGVSAFLYLLIDQIWNKDTRRKIFALIYMICGILTAGIWVIPSLKGGTLIYPLTTSLNPFKRLSAGNDSFYFGLAAVLIAIAGILLARGGKKAGFVFLLIMLACTTPAAYRQLFWMTRFAPMVYGFFFSACLEWVRLKKKYCVLLAALLCVDSISCMNLDFYSVATSDETKMEMQQLTELTDQRTAVIDK-QGAETGDNIVLLNEALDRKYYRFLFDRAVEADTVLIRKSDLEKQDITISDIEQDAAASGYSMVQEMTTAYTYKRET 440
5 -11.500PF03901.17; F4K887_ARATH/41-451; Alg9-like mannosyltransferase family  ali follow..  10  1.........IFLFCLAFRVVNALLI---WQSLEVAHRTIFGYGYMTWEWKR------GIRSYLHPMLFAFLYKLLQVTGLDTPYIMIK----APRLMQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTF-SNCLETVLTIMGLYYWYPVNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLLPLNFLKFNFLSSGGDYYGTHPWHWYFTQGFLVMLFTFTPFSIAGIIKSKNQKLSALILWVLAIYSILGHKEF--RFVLPVLPIALIFSGYAFAQMEVSGSS............................................................................................................................. 327
6 -11.300PF14897.6; D9S910_FIBSS/29-351; EpsG family  ali follow..  10  1...........ITFAILLIFLVCQEGFRWQI----GTDWLPYYRMFEYNLS--------------------GMVEFGYVLFSTVVKTIRNDYSFFLLVIALIKYIAL-ACLIKRFSINPLISLCIAYAIFIP-------LLGMNRQFLALSVVFFSIYFIAEGKFSTFFLLICFASFFHKTA---LLFLPAYFLWNLKLEKKKTICILLAATVIGFIGVLNVLPLDYISNYLDAGSAFRLQLYMKNTHTYSMINGCLFRFFIIAVCFSI-KLYLVSVFMYVLFQTSALNILAGRGALYYSCSQIIIIPYIVKYLSRDRIHEMLCWFVFFLLYLYIMQKD............................................................................................................. 305
7 -10.600PF09586.10; Q839W8_ENTFA/19-846; Bacterial membrane protein YfhO  ali follow..  14  1........SFFIPFLIMAIIYLSIGIYPGSSRSVLASDA--FSQFSNFHASFNNVLHGKQSLFYTWNASLGLNYLSLIYLGGLFTPLMPDALYFLTLLKIGSAGLSFWFLAKQTFKIPKWSHVTLSVSYALMSFIVAHSEL-WLDAFIYLPLVILGI-LMDQRKPTLLFVSYFLLFITNYYFGMIGLFSFLYYFARQRYKSRIVAYFTTSLLAGGASMIMVLPAVLDLRTNGETLSEITTFKTEATAFLDIILLPLIFCLFYFVTKEVPLKNKLLFGSLFVLLIASFYITPLNLFWHYSFLFSFLVILLAGYGWEKFEKDDLGVLSGLILILLAIFALAMG........................................................................................................... 382
8 -10.600PF02516.14; STT3_SCHPO/23-509; Oligosaccharyl transferase STT3 subunit  ali follow..  11  5........LILICIAVASVSSRLFSVIRYESI-IHEFDPWFNFRASKILVEQGFYNFLNWFDERSGRVAGGTLYPGLMVTSGIIFKVLHL-DVCVLLAPAFSGITAIATYYLARELKSDACGLLAAAFMGIAPGYTSRSVAGSYDITLLMSTFALWIKAVKSGSSFWGACTGLLYFYM---TNMIPLHVFVLLLMGRYTSKLYIAYTTYYVIGTLASMQV.................................................................................................................................................................................................................................... 238
9 -10.300PF05208.13; B7FU52_PHATC/1-358; ALG3 protein  ali follow..  13  1...........LLIMELGLNVVVIRKVAYTEI-----DWEAYMQEVEFWLDGELDYRKIYGGTGPLVYPAG-----FLYLFAWLRKLTNSGNDIQTAQYIFAAFYVGTQFAVLLLYQQILSSWLGMAVLCLSKRIHSIFVLRLFNDGPTMLLLYISMLLFTWNRWNVGCVVFSMAVSIKMNVLLFAPGLLLLLL.............................................................................................................................................................................................................................................................. 173
10 -9.820PF04188.13; Q6NKT6_ARATH/13-489; Mannosyltransferase (PIG-V)  ali follow..  11  2......ETILIKYAIFSRLLVLFLTIL--WRSLLQPYDTSAALNPPCLYHKEDSFPFLVANAASRSLENSSVYFLRITYAFLPLL-----PFFIFTVSNLAFIFAAIYLFRVSVIILDTEASFRASIIFCFNPA--SIFYSSIYSESLYALFSIGGVYHLLSGTSNVGVLWFALSGCARSNGILNAGYICFQTMHRAYEALYQKRRAYLAMQVFIAGFLRCICI................................................................................................................................................................................................................................ 249

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.