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Query: [S] COG3859 Predicted membrane protein, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCASKRSFFMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRRGLTAGLVGGLIWGILSMITGHAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLKLVPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISAILTAIAAFVILIIFVKKFPKLFIYSNYLast
1 -75.100PF09515.10; Q65FS0_BACLD/10-188; Thiamine transporter protein (Thia_YuaJ)  ali follow..  33  1...................LIEIAIMTGIALILDMVLKMPQGGS-IAVMMIPIFLISFRWGLKAGLATGFLAGLLQFVTGGFYVVHPLQLLLDYFIAPTAAGIGGFFAGSIRNAIISYVMLAVLLGSGLKFLAHVISGAVFFGNYAPKGTPVWIYSLVYNGTYMLPSFIVCTIVLCILLLTAPRLLE.... 179
2 -19.800PF07155.12; Y1634_STRA5/4-171; ECF-type riboflavin transporter, S component  ali follow..  13  2...............TIKKVVATGIGAALFIIIGMLVNIPTPNTNIQLQYAVLALFAVIYGPGVGFFTGFIGHALKDSIQY-------SPWWTWVLVSGLLGMIGFFAKKLAIQLSGMTKKDLLLFNVVQVIANLIGWSVVAPYGD----EPASKVFAQGFLSSLVNSITIGVGGTLLLLAYAK....... 168
3 -16.000PF17099.5; TRPP_CLOPE/6-177; Tryptophan transporter TrpP  ali follow..  14  1...............NTKLITINALLLAIGVILHQITPVLGLPMQPDFAITMLFIIILNDNFKITMVSGTLMGIFTAMTTKFPGGQLPNVVDKIFTALIVFLFIALIKKSNILGRLSVEKRNNILMAIVLPLGTLVSGILFLGTAKIIVGLPASFSILF-LTVVVPSVALNTVIGLVLYRIVEKSLR.... 172
4 -14.400PF12822.7; B0RZQ4_FINM2/7-171; ECF transporter, substrate-specific component  ali follow..  16  4........................TTIAICIAINCL-----GAFIAVSTKVPLLLVCMLFGWKYGIVTAFLSSVMNQILFDPFAL--------FAPTGMLMVFVGILYEKGYFKKLHTIPALLLAVLPGAILGAIIQGYIFVRFMINKGVNPAAASFINQYFMEFVDRLISFTVVMTAV............ 165
5 -13.400PF07694.12; Q9KU35_VIBCH/25-193; 5TMR of 5TMR-LYT  ali follow..  13  5........PLLNISGRFDHKISVYVLFSLFCIMGTYFGLQINDAIANTRAIGAVMGGLFGGPVIGFAVGLTGGLHRYTLGGFTDLACAISTTAEGL------IGGLLHTYLLRKGKGKLLFSPSIVFAVTLFAEIVQMLIILVVAKPFEQSYALVSTIA-APMIIANSVGAALFMSIL............. 167
6 -11.500PF09512.10; R7D9Z9_9FIRM/12-160; Thiamine-precursor transporter protein (ThiW)  ali follow..  18  1...................LAIAGVLTAAAVAGSLISVPVAGSKCAPVQHMVNVFAAVMLGPWWGIGIAFCASLIRNLLGIG-------SLLAFPGSMVGALCCGLVFRLTRKLSLTCVAEALGTGILGGLAAYPVAKLLMGLAPA---------GFTVYMIPFFISTFTGSVLAFILLRVFEK....... 149
7 -10.000PF07698.11; Q8EPX7_OCEIH/268-467; 7TM receptor with intracellular HD hydrolase  ali follow..  9  32...............NMKKVAAVLLISVVTVFLMKVTSLYTSQSNQLFFVTPIILHKLLLHERIAIKMAIFYSIIATVIFNGQIAGALN--VEVGIYFLVSQVAAVGLLSNVKDRYAILKSAFGMS--------LIHIATILLFIFLSFEKYTWMDIIIQGSFGIISACLAAVLAMGMLPLFESLL..... 196
8 -9.720PF09991.9; U5LGL3_9BACI/15-301; Predicted membrane protein (DUF2232 topsan)  ali follow..  14  1.......................AVFAVLMLLTLYVPVL--GVVTNLFLAAPFILFAATNDRKSSLVFLTGGILISLIVGTILAI--------LALLYGITGTVIGDFIREKKSRFSTYMASSLAFLILLVAQYGIAVQFF.................................................. 109
9 -9.570PF01891.16; CBIMQ_METLZ/2-215; Cobalt uptake substrate-specific transmembrane region  ali follow..  12  32..........RLVKRNPESLPLLGLAGACVFILSSL-KLPSVG--SSSHATGTGFGAILFGPAVCSVFCTIVLVFQALLGGITTLGANIISMGVAGPLAACIIFKIGHLIRPEFSIRSFSVTVFCAAAAADLVTYMMTSLQLALAYPAAEGGVLASFITQVPLAVLEGILIVLMMRFVIRIRPDI...... 214
10 -8.960PF10710.9; E6U1D2_BACCJ/1-133; Protein of unknown function (DUF2512 topsan)  ali follow..  14  12............................................GFVSLVLLSTLTFFEVAISWILFAAFIAVIPAYVIGDLLIYNFIASLADLGLYSIVLWLLNVTVMDGIVPTLGFALLAAFFISFLEAIYH......................................................... 105
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.