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Query: [S] COG4241 Predicted membrane protein, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYQTRPLTEGAVFASLFAVLFVITFFVPFIAFITMWFLPIPFLLYTLRHGLKPAVIVLLVASVVVMLILGPLLLLLALLFGTSGVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETMRQSMQTAEQLIIGLGQEPSEALKQMEESINQLFYLGPAMVVICGTLLAAVTQLVAAPILKRLRHEVKPLPPFRTWSFPRSFLFYYLAVVVLFMIGFEEGSMPYIAVWNLLPVLEIIMAIQGFAVIFAYFHTKGVAKAVPVIIMILCIIVTPLLYLVRIIGIIDLGFDLRKRMGSQGKLast
1 -82.200PF09991.9; U5LGL3_9BACI/15-301; Predicted membrane protein (DUF2232 topsan)  ali follow..  30  1..............AVFAVLMLLTLYVPVLGVVTNLFLAAPFILFAATNDRKSSLVFLTGGILISLIVGTILAIPLALLYGITGTVIGDFIREKKSRFSTYMASSLAFLILLVAQYGIAVQFFELNVIKESFDILKQSVDKIVSLMENLGQPLEKMKDQLYSGIGLTETLIPSLLIMASFINVLILQAVSLPIVNRFGVNMEKWGQFRNLSLPKSVLWYYLITIIAALLLKEEGTVLFDAFINLSFILQLLMIVQGLSLVFYFCHIKGYPRAVPVIAAVLSFILPFLLYIIRILGIIDL............. 287
2 -12.600PF09515.10; Q65FS0_BACLD/10-188; Thiamine transporter protein (Thia_YuaJ)  ali follow..  16  1......LIEIAIMTGIALILDMVSGMFLKMPQGGSIVMMIPIFLISFRWGLKAGLATGFLAGLLQFVTGGFYVV-YFIAPTAAGIGGFFAGSIRNASFEKQKGKIISYVMLAVLLGSGLKFLA............................................................................................................................................................................................. 125
3 -9.410PF09605.10; R5JZ17_9CLOT/12-197; Hypothetical bacterial integral membrane protein (Trep_Strep)  ali follow..  13  1...GKDLISIGIFSAIYFVLNFVCMLVSGLHPIIWILMPIPVLLMCARVQKFGAILLMGMVTGLLYFVTGQFTVILLITFAIACILAEVIRLLTGYDKFWGNAVAFACFSLGMVGSPLPIWLMKESFLAQISS-------------------QGMAESYVEALRNLSSTGMLVVLFLAPIVGAFLGALIAKGMFRK.................................................................................................................... 182
4 -8.850PF12822.7; B0RZQ4_FINM2/7-171; ECF transporter, substrate-specific component  ali follow..  16  4..................TTIAICIAINCLGAFIAVSTKVPLLLVCMLFGWKYGIVTAFLSSVMNQILFDPFALPFAPTGMLMVFMVGILYEKGFKKLHTIPALLLAVLPGAILGAIIQGYIFG............................................................................................................................................................................................ 117
5 -8.150PF07155.12; Y1634_STRA5/4-171; ECF-type riboflavin transporter, S component  ali follow..  11  1.NTIKKVVATGIGAALFIIIGMLVNIPTPIPNTNIQLQYAVLALFAVIYGPGVGFFTGFIGHALKDSIQYSPWWTWVLVSGLLGLMIGFFAQLSGMTKKDLLLFNVVQVIANLIGWSVVAPYG............................................................................................................................................................................................. 128
6 -7.010PF05279.11; ASPH_MOUSE/52-307; Aspartyl beta-hydroxylase N-terminal region  ali follow..  21  7.............................................................................................................................................................................................................................................................ISGGSFFTWFM-------------------------VIALLGVWTVWFDLVDYEEVLGK 44
7 -6.820PF10131.9; R5JZI7_9CLOT/75-690; 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein  ali follow..  9  30......IAFVIFVVGGLPWILWGRRVLGTFFGVLWFFMPVPYVIWFL-RKKNNRAAVGLFVCMTLMSFTHLMVTAIMGVSAFLYLLIDQIWNKDTRRKIFALIYMICGILTAGIWVIPSLKGGLVTSESGDGSVMSTLIYPLTTSLNPFKRLSAGNDSFYFGLAAVLIAIAGILLARGGKKAGFVFLLIMLACTTPAAYRILVKLPFSQLFWMTRFAPMVYGFFFSACLEWVRLKKKYCVLLAALLCVDSISCMN......................................................... 305
8 -6.750PF07698.11; Q8EPX7_OCEIH/268-467; 7TM receptor with intracellular HD hydrolase  ali follow..  14  30DWNMKKVAAVLLISVVTVFLMKVTSLYTSQSNQLFFVTPIATILHKLLLHERIAIKMAIFYSIIATVIFN-LNVEVGIYFLVSQVAAVGLLSNVKDRYAILKSAFGMSLIHIATILLF.................................................................................................................................................................................................. 154
9 -6.680PF15382.6; I3MIB0_ICTTR/40-107; Domain of unknown function (DUF4609 topsan)  ali follow..  10  5...............................................................................................................................................................VKQKSNKKKFVIPQIIITRASNETLISYCSTGNEEQRTIREQADWGPYHRHRNPSTV................................................................................................ 61
10 -6.140PF01998.17; E3GZA2_METFV/23-80; Protein of unknown function DUF131 topsan  ali follow..  14  23.................................VVMIGPIPIIFGSDRQMAILGVVLAIILMILAYIL.................................................................................................................................................................................................................................................... 57
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.