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Query: [S] COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIRGIARRPRCAVEGDWMSAGFCHVSEGKACPTAEMRGVALGRFLICGATGLSFLTLSLAAVSDAVAETLLWTGPDGAEWFTDAAWGPSHRVPNAGDDAMINTYGPVITIGTNAEVHQLSIGNAPGDGTLVVQGGLQTNSVILGATGGSSGTASFIGANWANDGDVSVGGNGTGSLLLLHGTTASSENIYVGESGTGSGSLKLDNSSTLTVADTVFAGYNSWSSSAAGGSGNVEVLGASSLYSANGVLANDPDTVGTALVSGGGSSWNMSSDLVVGEAGVGTLTITGGGMVISQTTTVIADLNSADGSSVTVSRLGSSLQSDSLVVGNGGAAKLVVEAAATVTSGEAIIGRHSASEATVTGDGSKWTTGDLQVGGDTSDPGGLAGNGTLNVTAGGSVDSTVAHLGVVAGATGSAIVDGKGSVWTVDRNSLEVGVSGAGSLAVTGGGLVDAANIIIGTNTGGNGSVRVSGADSTVKSRSDLNVGLYGNGSMTVEAGGAVKSRDGYVATYGGSTSAVTVTGDGSSWAMTGTFFVGYASGATGNVTVSNGGAIRATGVTLGDLAGASGTMTITGAGSKVTAYVDNGTVNSGSVDVGFQGSGSLSVVNGGSLDAYNLYVGNALGSSGAVLVSGVGSHVSVDGLMVVGNAGNGSVEITGGASLAAPTILIATEAGSTGVLSIGAGSGQTARSAGAVEARAIAFGAGNGSIVFNHSETGYTLSADISGAGRVVAEAGVTTLSGNNSYSGGTTISAGMLKGTAKSFGSGGIVNNAELVVDGGGTLSNAISGTGSFEKTGDGNLLLTGNSTYSGATAVSAGKLSVNGSLASAVSVGSGATVGGTGTIGGLTVNSGGTLAPGNSIGTLTSTGNATFASGSTYAVEIDADGSSDRLAVTGTITIANDVSLIVTPLGAHSAYSLGTRYTILTATGGVTGTFSSVDESFAYLTAKVAQSGDDATTYLSFLRTSPDSGLLAAATSTANARAAANAVEALGQTSPLYEAALFLQQGETQGAFSQLAGEIHPSLAMALINRSGQSRDVILNRLRSAFEGVDARPILPVAYAEGGQNPFAVDDGALSFWSSGFRSRGRIDSDGNGSSVDMNGGGILFGLDGELSDSWRAGVAAGYGHDGIKQTALAASADVDSYYLAAYAGTQIGPASLRLGAIHAFQDAETRRSISFSTLQESLSASYGGSTSQVFAEAAWRFDFDLTHIEPYANIAYVNTRTDGFQEKGAIAAVSSGSTRYDQLYTTFGARISRDIALEGMLGRAMFDLAWRHNYGDTAMGSSLFYEGGGVFSVASTSSPRDAAILNLGLSYDLTPSATLTFRYGAVFGAGVLDQSAAAELGVRFLast
1 -20.200PF03797.19; Q32HY9_SHIDS/423-663; Autotransporter beta-domain  ali follow..  19  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MWSSAINTRNNVT-TDAGAGFEQTLTGLTLGIDSRFESSTIRGLFFGYSHSDIGFD-HGGKGNVDSYTLGAYAG---NGAYVDGVVKVDRFANTIHGKMS----GATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNG---MRADVGNTQILRAEAGTAVSYHMDLQGTTLEPWLKAAVRQEYAD---SNQVKVNDDGKFN---NDVAGTRGVYQAGIRSSFTPTLSGHLSVS.................... 241
2 -8.340PF10677.9; C6XUB1_PEDHD/25-222; Protein of unknown function (DUF2490 topsan)  ali follow..  10  2..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SGWFL-------------------------FLNSTKFNDKWGM-------HLDVQLRSADEWDGLRNFLFRPGVTYYINKSNATVGYLLTNTF------------DQTGPVGHVLTEHRIWEQYILMHKIKSVAVQ----------HRFRLEQR--------EAAGDDIFSQRLRYFLRGIIPLTETKETFTKGP--------AALQNELFFNVQHKAKLNGKLFDQNRAYG--AIGYRFSKSFDVEAGYLNQFINGASNNTMN....... 198
3 -7.970PF05088.12; A4XWG7_PSEMY/77-1608; Bacterial NAD-glutamate dehydrogenase  ali follow..  14  578.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LVLIAAMPWRDVALLRAYARYLKQIRLGFDLSYIASTLINARKLTAEDLEDKQQKLEQAILAALDNVAVEDRILRRYLDLIKATLRTNFSYFSFKLSPRLIPEI--EGVHLRFGDVARLRAVIVPMGAKGGFVPRKMPVGGSRDEVMAEGIACYRIFISG-GEVVPPVNVVRHDADDPYLVVAADK-LGDAFASGGSAGYDHKGMGITAKGGWVSVQRHERGIVTVIGIGDMA---GDVFG-NGMLLSDKLQLVAAFNHMHIFIDPNAAKSFAERKRLFDLPRSSWADY--------DSKLISEGGGIFLRSAKSITTPQMKARFDIAADK--ELLNALLKAPVDLLWNGGIGSKESHADVGDKANDALRVDGRELR--AKVVGEGGNLGMTQLGRVEFGLHGAGGVDCSDHEVNIKILLG. 1108
4 -7.570PF07239.11; C0DX39_EIKCO/30-267; Outer membrane protein OpcA  ali follow..  14  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PINDGYTVT--AGYAHENAKIDQLKYSGDG----VTLQGRADIQQHAIRAELGYRYLDSD------AKANGEKVINGAKTNNVDVYAGYLFSPSGFNGGLRVGGGLGYSHGKMD-LHSHQTDLDGDAVDISANNLYLKAQVEYEQQL---GSGWSITPWTEAQVSL---HRRVEEKYTQIEFASDGRYKQNNYSLGLGVDVNKQLGESTSLTFGYENIEVPKTSRHSFGIRGGVRF 238
5 -7.420PF01389.17; OMP53_HAEIF/23-224; OmpA-like transmembrane domain  ali follow..  11  5....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TFYAGVK-------AGQGSFHDGINNNGAIKKGLSSSNYGYRRNTFTYGVFG--GYQILNQDLAAE-------------GYDDFGRAKLREAGKPKAKHTNHGAYLSLKGSYEVLD-GLDVYGKAGVALVRSDYKFYED---ANGTRDHKKGRHTARASGLFAVGAEYAVLPELAVRLEYQTAINYNPWIGCINAGISYRF 198
6 -6.640PF06178.13; Q8ZQ33_SALTY/16-230; Oligogalacturonate-specific porin protein (KdgM)  ali follow..  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FSSYLQAATLDYRHEADRTRINKDRIAIIEKLP-NGIGFYVDASVKSGGVDGEQDKHLSDLVANAIE-----------GVSYNYKVTNFVLQPGFIFESGPDTSI-------KPYLRGQYNFDSGVYMAGRYRYDYA---SDDEKTNRFDTYIGYVFDELKLEYNFTWMDSDQIKFDN---KKTNYEHNVALAWKLNKSFTPYVEVGNV-NTDERQTRYRVGLQYHF 215
7 -6.620PF05086.12; O15924_DICDI/5-925; Dictyostelium (Slime Mold) REP protein  ali follow..  11  469.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................INGVTSTSIFLTPNNSPVNLIKVKSVIKFIQLCIVMKELLDFMTIRSINYETFKSIISELLGMSERVLN--LEQDVKKLKDLLLKKSK------KSTIDDESELLSRVSNHREFATFLYEFINKNKHLSLSKSDNYLKFVDSITSTLCVE-IG--SRFQPTGDIIKMNSLFSSFTVSQQSEEDLKRKYSLMSSDLSGLLKDKSRFNPSNFDRYVLISFNNNVSGHCKV-----FSFGDVSNNRYEEYMGKTRVITAFFFAQTDKITNDKNISRQIKSIKI----NRSYINIEVDSV-KSGFSKVVQINSSEFSFTISCLNISFSSVLISKNKLNNLSSLVA--------------------DYYVKSTELLRKADKLEQLLKKYIENFQKLNFDFESSAGDDIRNE.......... 906
8 -6.540PF04497.12; Q070I7_CPRVZ/5-715; Poxviridae protein  ali follow..  11  448...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VEPVPVKMELPETATVRGDTLYTEGYCVRVCSPFNNEAYREQALTAYVRSNNVPLRSATMPQITRKLADGNVECSMGVVKNYISPGAVPPTGEAKGIAVCCLENWYPYNHN------------LLVGSEKPI-----------VASKDVCID--------------------WGRYQFLSEIAYC----DSRMATVF-----NTNCYYPA----CFAYCTY--------VARYLTATYVAYRNVSRSSDGANFML------------TL---------LIGAFCNVTG-LEEREAFSDMS--VDRAVASGDVF----IP-----ALVNIAA-----------LCYR.................... 710
9 -6.450PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein  ali follow..  10  16...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VAAGTPASAAEHQSTLSAGYLQTHTDMPGSDDLNGIN----------------KYRYEFT-DTLGLI--TSFSYANAEGEQKTHYND-----TRWHEDSVRNRWFSVMAGPSVRVNEW-FSAYALAGVSYARVSSFAGDYVTLTSDEGKKQEHLTRSDSALTYSAGVQINPTENIVVDLAYEASGRGDWRTEAFIVGTGYRF 199
10 -6.390PF02462.15; P95343_NEIGO/52-174; Opacity family porin protein  ali follow..  16  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASVIYDFDTQS----------------PVKPYFGAR-------------SLNRASAHLGGSDSFSKT--------------------SAGLG---------------------------------VLAGVSYAVTPNVDLDAGYKVNTVKNVRSGELSAGVRVKF 123

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.