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Query: [S] COG5650 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDQKLDQQKVDRVSPGDSEPVARDFINAIGGRFGRFAQVGTQRFWTPLRVLITTSLVFLAMGFLTKANCIQGSRGTDGVVSLNWSGSRQYTSACYNDIVPLYGGRGIDAPGFPYAFSWQEGDLTRYMEYPVLGGIFQWICGIITRFLYPVVDVIPFHTLPESGLYFIVTALALAFFWVLVIRMMVELTGNRVWDTVLVAASPLVAVHAFTNWDTPAIAAVIGAMLAVKRGNPLVAGVLIGAGTAFKLWPLYLLGAYLVLAVKNKNLKPFITMAAAAAVTWLVVNVPVMIAYPKAWNEFLRLNRERGAEWTTIYQVIDRNLPINLNDPVLLNVLSFGLFGASCVAILILGLKVQRTPRVAELAFLIVAAFLLFNKVWSPQYSLWLVPLAVLAFPQWKVLFPWMVTDAMVWPILMWHMLGTDNKGLPHEMLDLIVISRDAFIVVMIVGVIRQMLGRRADPVMDAHAGRDLLAGPFGAGERRKALKEVSLast
1 -34.700PF05007.13; PIGM_RAT/140-408; Mannosyltransferase (PIG-M)  ali follow..  15  1.............................................................................................................................................................................................................VSSRGNADSIVASLVLTTLYLIEKRLIACAAVFYGFAVHMKMYPVTYILPIALHLRPERSWAVLLFVAIAGLTFLALSFGFYYKYGWEFLEHTYLYHLTRIRHNFSPYFYMLYLTA----ESKWSFTLGIAAFLPQFILLSAASFAYYR--DLVFCCFLHTSIFVTFNKVCTSQYFLWYLCLLPLVMPLVRMPWKRAVVLLMLWFIALWLAPAYVLEFQGKNTFLFIWLAGLFFLLINCSILIQII................................... 269
2 -23.000PF06728.13; B9RC32_RICCO/30-452; GPI transamidase subunit PIG-U  ali follow..  9  25..............................................................................................VSTPLTSL--RRLAEGYW-LKQLSISPYAGSMYHGSPLLLSVLGPLYVKRI-------EGQPNHVLCSLLFVIADFISAMLIRATGRKLQKAYRQSLEAALVYLWNPFTIVACVGLSTSPIENLFVILTLYGACIRLVPLAAFGWVMATHLSLYPTILIIPVILLLGCGPDAPPFLWSIYVLVLCSISVKQYGSLWECFSHLQTYGFILTVE-NIGVLWYFFAEVF------DFFRNFFLIVFHTNILFMVLPLAIRLYHRPCF--LAFVYIAISSMLKSYPSVGDSALYMGLLGLFLDQFSFFIFCGYVGVSLLSPVMHNLWIWRGTGNANFYFATAIA.................................................... 421
3 -21.700PF15971.5; D2RW44_HALTV/57-219; DolP-mannose mannosyltransferase  ali follow..  10  1.....................................................................................................................GGVPYVDVWDVNPPVPFAITAALAVLSG------GNMYVLHGLSVILTLLVAAANILLVGWVAFLVTGEDAAAVAAGLTMLVVPELFLLPLAGWAQFYALFFGVLSLALALRDRPFLAGVAAALSAGSWQSGIAFAPLVVGMTYQRTGGKDVLRAIAGGGVVTGVVVL......................................................................................................................................................................................................... 163
4 -19.600PF09594.10; Q5Z2C4_NOCFA/88-323; Glycosyltransferase family 87  ali follow..  14  1..............................................................................................................................FTYPPLAALFFAPLALMP-------------LVLAEVVVLATSLGCLGLTLWLVLARLRPGLDPRAAVALALYLEPVRQTFGFGQINLVLMAAVALDCL--VRKPFWPRGMLIGITVSIKLIPAGFLLYFLL--------RRDWKAAGTMVVSAIGAVGLGFLLFPSDSAEYWLRTLADTGRIGPPYFAGNQSLKGLAFRLGVPDSAATLIWLGLAVIAVALAALWMHRLIEAGQSVAALLVNAAAILLVSP............................................................................................................ 236
5 -18.700PF05208.13; B7FU52_PHATC/1-358; ALG3 protein  ali follow..  11  1...................................................LLIMELGLNVVVIRKVA--------------------------YTEIDWEAYMQEVEFWLDGELDYRKIYGGTGPLVYPAGFLYLFAWLRKLTNSGNDI-----------QTAQYIFAAFYVGTQFAVLLLYQQILSSWLGMAVLCLSKRIHSIFVLRLFNDGPTMLLLYISMLLFTWNRWNVGCVVFSMAVSIKMNVLLFAPGLLLLLLQVGPDAQTVALGLGCALPQLILGAPFLTTYPVSYLR--AFELDRVFFYK--WTVNFKFLPEEVFLSKGWAKILVALHVGTLAFCATQQLAQAKPEYVVYIMFLSNFIGIAFARTLHYQFYCWYLPYLLWSIPSYPLLLKIVIMGCIEA............................................................................. 346
6 -16.400PF13231.6; Q2YBZ2_NITMU/191-351; Dolichyl-phosphate-mannose-protein mannosyltransferase  ali follow..  17  1...............................................................................................................................DHPPMVAWLIWLGTSIFGNS----------EFGVRVGAFLCGLITMGYLFALTRNLYDSATGIRA-VLLLAILPFFFATGALMTTDAPLVAAWAATLYYLEQRAWLGVGIAFGLGILSKYTLGLVGIAALVFVIIDPVARRWLR-PYLAVLLALLLFSPVII..................................................................................................................................................................................................... 160
7 -15.400PF03155.15; S8A5I1_DACHA/15-491; ALG6, ALG8 glycosyltransferase family  ali follow..  14  14..............................................................................................STDFEVHRNWLAITHSL-HPSKWYLEDTSEWTLDYPPFFAVFEWVLSQFAQFFNYGSVETVYFQRLSVIVSELVLVLSLRRFINIQSTPQAKKVANIISLSLLLSPAFLIIDHIHFQYNGMMFGILIFSLTDALNDNLLRSGILFAILLCFKHIYLYIAPAYFAYLLRRIQFANCIKLGVSIVSIFGVAFGYFAAIGQIPQLLSRLFPFSRGLSLGSATRGLVGDTSFAVLPNIPPRVTFLLTLVVQLVCLVKLFLQPSPMRFIGAVTLCGFASFMFGWHVHEKAILLPLVPFSLLALQDRRYLGAFRPLAVAGHISLF......................................................................... 384
8 -12.900PF02366.18; PMT1_SCHPO/38-284; Dolichyl-phosphate-mannose-protein mannosyltransferase  ali follow..  11  1...................................................IFLTVVAFCVRAQR----------------LMNPAKVVFEELRYYNYAVDYVNNKLLMDV-----------------YPPLGKLLFSLVAALTGDEPGQQYPFTDVAYSMRLFTCLLGSLLVPLMYGTVYFPTKSKTAASLAALFVIFDNGLITMSRYIMIEIPALYFMSLTAFYWSVYELLSTGVALGLALSTKLSAMFTFGWLLILAALSVPMYRIVKHLFSYIFYLIGVPITVYLAVFAVHSHIA........................................................................................................................................................................................... 246
9 -12.400PF09852.9; Q10XG3_TRIEI/32-516; Predicted membrane protein (DUF2079 topsan)  ali follow..  10  56...............................................................................................................................HFTPALLLWLPIYVLFPY------------PITLTVLQVTLISVSGLVLYILARQHLQPQLSAMMSISFYGANAVIGPTLANFHDICQIPLFVFSLLLAMEKRWWSLFWILAVLTLAVR-SGVVLFGVGFYLILSKRYPKIGLAICTLSFSYMIALTMPVFSEDISQRFMMERFGQYTEGDQASTLEIIWGMMSNPWRLIKEIFTPFFGTLKYLLGQWLPLAFVPAVAPAAWMIAGFPLLKLFSAKGSITIRYAMTVVPGLFYGA.............................................................................................. 316
10 -11.900PF04188.13; Q6NKT6_ARATH/13-489; Mannosyltransferase (PIG-V)  ali follow..  9  4.............................................ILIKYAIFSRLLVLFLTILWRS--LLQPYDTSAALNVVW------------D--SVYFLRITECG---YEYEQTYAF------LPLLPFFISLLSRTVFAPLVPLIGLRAVMVLSGFTVSNLAFIFAAIYLFRVSVIILKDTEASFRASIIFCFNPASIFYSSIYS-ESLYALFSIGGVYHLLSGTSNVGVLWFALSGCARSNGILNAGYICFQTMHRAYEALYQKRRAYLAMQVFIAGFLRCIC.................................................................................................................................................................................................... 248
11 -11.700PF09913.9; Q83H24_TROWT/46-427; Predicted membrane protein (DUF2142 topsan)  ali follow..  11  10.......SSPIGSSPDDDFHLASAWC-ALGDRPGLCESSGIKDAKKVPTTILDTWHGKGS----RHGNL--------------YCFLNGVSPECQNKWLGNTDHKMQDTGRVNFGNNA---------QYTNLYYSAMGLLASDDVRAS-------------VWGMRLINAFIFTALSLLLYLALPQPRRAALLITWSLSLVPAAMFFI-SSWAFIGVPSTFFAMLSFFETRGIIAVFSVLLSAFARIYALLAIVISGILQVRDFKAQFALPVALGIMSIATFFMYPLNVAATGL--YGFITFVKNIIFIPSSFLPSVFTPQFLGWLDVPLYPPAYVFVAIAALIIVGFALGVGGVRKLFAVLLTLAALIIAADKLLQPRYLA---PLAII................................................................................................ 382
12 -11.600PF03901.17; F4K887_ARATH/41-451; Alg9-like mannosyltransferase family  ali follow..  7  1.................................................IFLFCLAFRVVNALLIQT----------------YFNPDEH----WQSLEVAHR---FGYGYMTWEWKRGI----RSYLHPMLFAFLYKLLQVTG---------LDTPYIMIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTNCLETVLTIMGLYYWPPVNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLL-------RLMYGSWVIVPLNFLKFNFLSSGGDYYGTHPWHWYFTQGFLVMLFTFTPFSIAGIIKSKNQKLSALILWVLAIYSILGHKEFRFVLPVLPIALIFS.............................................................................................. 314
13 -10.800PF02516.14; STT3_SCHPO/23-509; Oligosaccharyl transferase STT3 subunit  ali follow..  8  1..............................................PLKVLILICIAVASV-SSRLFSVIRYES----------HEFDPWFNFRASK---------VEQGFYNFLN-------DERSWYP--LYPGLMVTSGIIFKVLHLLRINVNIRDVCVLLAPAFSGITAIATYYLARELKSDACG--LLAAAFMGIAPGYTSRSVAGSEAIAITLLMSTFALWIKAWGACTGLLYFYMVTAVFITNMIPLHVFVLLLMGRYTSKLYIAYTTYYVIGTLASMQVPFVGFQPVSTSEHMSALGVFGLLQLFAFYNYVKGLVSSKQFQILIRFALVCLVGLATVVLFALSSTGVIAPWTGRFYSLWD--IIASVSEHQFLIWLLPVGVYLCFKELR-------VFIIIYSVLGTYFCGVMVRLVLTLTPCVCIAAAVAISTLLDTYMGPEVEEDKVSEEAASAKSK................... 433
14 -10.700PF14897.6; D9S910_FIBSS/29-351; EpsG family  ali follow..  10  57.....................................................................................................................................................................YSFFLLVIALIKYIALACLIKRFSINPLISLCIAYAIFIPLLGMNR-QFLALSVVFFSIYFIAEGKFSTFFLLICFASFFHKTALLFLPAYFLWNLKLEKKKTICILLAATVIGFIGVLNVLPLDYISNYLDAGSAFRLQLYMKNT---------------HTYSMINGCLFRFFIIAVCFSIEIPLYEKWFHLFFKLYLVSVFMYVLFQTSALSQIIIIPYIVKYLSRDRIHEMLCWFVFFLLYLYIMQK...................................................................... 304
15 -9.670PF10131.9; R5JZI7_9CLOT/75-690; 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein  ali follow..  10  4................................................................................................................................WGPLSYYIMAGLMFLTSGD---------LLLAYRLIAFVIFVVGGLPWILWGIHENRRVLGTFFGVLWFFMPEHIRIYFTAGNLQMVTTMLVIWFLWLYVRKKNNRAAVGLFVCMTLMSFTIMGVSAFLYLLIDQIWNKDTRRKIFALIYMICGILTAGIWVIPSLKGGLVTSESGDGSVMSTLIYPLTTSLNPFKRLSAGNDSFYFGLAAVLIAIAGILLARGGKKAGFVFLLIMLACTTPAAYRILV-RFAPMVYGFFFSACLEWVRLKKKYCVLLAALLCVDSIS...................................................................... 302
16 -9.300PF09586.10; Q839W8_ENTFA/19-846; Bacterial membrane protein YfhO  ali follow..  7  2..................................................FFIPFLIMAIIYLSIGIYPGSSRSVLASDAFSQFSNFHASFNNVLHGKQSLFYTWNASLGLNYL----------SLISYGLFTPLVFFFNN-----------------QNMPDALYFLTLLKIGSAGLSFWFLAKQTFKIPKWSHVTLSVSYALMSFIVAHSDAFIYLLVILGI-LMDQRKPTLLFVSYFLLFITNYY-MIGLFSFLYYFARKSRIVAYFTTSLLAGGASMIMVLPAVLDLRTNGETLSEITTFKTEATAFLDIIMKNMIGVYDTTKYGSIPFIYIGLLPLIFCLFYFVTKEVPLKNKLLFGSLFVLLIASFNLFWHLFRYSFLFSFLVILLADLGVLSGLILILLAIFALAMGTKGATSYTYVTLTSFVLTATFLLLYFFGIAFYQLKKAPM................................. 421
17 -9.210PF04922.12; E3M395_CAERE/43-392; DIE2/ALG10 family  ali follow..  9  5..............................................................................................YMD-------EFFHISQTRLYCAGNYTWNPLITTPPALYILSMPLCGGYE-----RYANSILLFFAIPAFCRFRRMFVRVSIIIKNELKCLYLKEDVWLTVSIVGSLPILMASSVIFYDLLSLTTVIWGFS---IGNPVVSAAFFLVAILTRQTNIVWAAIYAFSVLNLKRLIFTAFSLWPFVGLAAGFLVFLYLNNFQIVLGDAKAHEPKFHVAQFFYMILFCAAHTWTQILPNLLSHLTLAPLYTFSARFMSLSTPNVHVFHKFLFVFASLLVLVPAHLFEMRYYI--VPYVIWRL.............................................................................................. 350
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;