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Query: [S] KOG1008 Uncharacterized conserved protein, contains WD40 repeats, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGNTHGLSWFPHFPDKFVSWGQEIHLYEVRRKDDHSQKSRLPYISVNYLANESRYQYARCVAASYHSDQPIIAVGLADGKVGICNFRDTYDSSWEYTPRQQRMCTCLAWNELDANILAIGHDRHRNDTCITIWDIERGVPKETANFFGVGESANSICWDRNHRTVIAGMSQKMIKLFDLRQSNATCQSIQTKTVQGLSVSPNGNYLCSYVDSVITLWDPRNIKSPLRQIQSSKNHLQIAWCPTRTSLLSSLQRDSSYITLYDIRSVDTDNSGEIYHVKRQISPFPARYQHSGKFSFVNCLSWHSRDFERALLLADALNILDFRLPATLHTAHSNRRKLPLLMQRPLYTPASPTSTAATPTQQQPTSSCSTNSGSSLDFSTPGGSPFNVDLLKPELFELDLVDETRQRALEDYGIKPDNKRFGELHLTPYLRNVWSTLNNVYSEDRLTGLKATLGINLGHTSEALMASSRIESQVLQWPEGINNSNKLICYRSEQRDLALQLCGWAFEQELDRFIDQLYANKEYSRAAMICVFHLKIFHACNILSSAADNMRDPSMYRITVIALSSFNADRCSSTWRNQRSSANMQIHDPHLRAVFSFLTMEKDNFDAVLKEEGVSLSDRMAFACKYLSETKLADYVAQQIQAAIDGGDLNGLLLTGESQDGIDILQSYMDTSFDVQTVALVAINYFRQELFEDKRIQYWIASYLDHLNSWGLWEKRAELDIKIESIRPSSRSSRTVFLSCNFCGKSVSNALLDEPRPRSTTTSTNRLSSCPSCRKPLPRCSLCLLast
1 -21.900PF16529.5; K7INF6_NASVI/86-417; WD40 region of Ge1, enhancer of mRNA-decapping protein  ali follow..  10  2......................................SSKVKLKNIVDFTWEHRYYVGQLLAVHM--SGKYLAAGNGNGVVRVVNKELEQRTLIR---GMRGLIQDLAFAHVSNPILACVDY----TGSLFVYSIEATSSELIVDADDPSPMSHRVIWCPEVSKLLALTRGSKAELWSIAAASRLEIYQHSGTIVEATFSPDGTALATASDGEVKFFQVYLHGATCGQ-HDGKPISSLFFLDDHKRFAVTGCDNNSELKVWSCELWTCLQTIKFSP------------MPNTQKTPVLKARLDLAASYLLLSDIYNKVLYILSISKDSE....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 332
2 -20.800PF08553.10; A7ERL5_SCLS1/439-794; VID27 C-terminal WD40-like domain  ali follow..  2.VNSQLAVGYKHDRS--FVVRGSKIGVFKHTPNNNLEFSTNISKVQ----TPNGKLFSPKKVMLHAEDTNMILQDERNPNSLYKMDLEYGK---IVDEWKVHDDIPVNTFAPESKFAQMTGEQLGLSRNALYRIDPRLAGNKLVDSELKQSKNDFSAAATTEKGYIAVASNKGDIRMFDRLGINAKHIPALGEPIIGLDVSADGRWVLATCRTYLLLIDALQKDETGAALSFTPARFNTGEGLSETSIITA---TGPFIVTWNMKKILRGSKDP--------------YSIKRYAEEVKADNFKYGSDKNVIVALPNE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 333
3 -20.200PF15492.6; NBAS_DANRE/79-359; Neuroblastoma-amplified sequence, N terminal  ali follow..  12  2......QLVLASNGKLLAVVQDQCVEIRSARDDFGSIIGKCQ--------VPKDPNPHWRRVAWSH--DCALLAYADSTGTVRVFDLMGSE---LFIIPPAMSFPGDFSYAAAGLMFLEYTGSAQTYSGQLKSYLVSVGTNQGFQENHHYSNGITTAIYHPGHRLLLVGGCESGDSDVSRASQCGITA-------RVLSGLPHYKQVTSYEDDISSFFKMPSFRLFSRHNGEQDGVFRMSLSPDGTILAVI--HFSGSLSLWDIPSFKLRGSWKQEEQPGFDEINP---------------EW.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 281
4 -20.100PF15390.6; G1PMX6_MYOLU/2-677; WD repeat and coiled-coil-containing protein family  ali follow..  56.FEHVYGVSWAPPGIAPLLAVQHKQHVTVWQLCPNTTETSKPLLSQTCEIREPRP-VLPQGCVWHP--QSAVLTVLTARDVSIAHN-VHCDGSRVKADSSAQGLIHCACWTQDGQRLVVAVGS----SLHSYIWDSAQKTLQRCSFVLDVLSDVRSIGAAVDS-QVVLATELPIGKICGLNASETFGVPPSSEDTCLYTSPVSDEMPSVDKGAASCGTNSDTSVSPFSSRSDPLDLTHIRFNGSKSESNALICLRKK-----NYLAGTDLDSSHLILVTFAQVVTQAKKVTIPGILVPDLIAFNPKAKVVAVASNTCNIIFIYSVIP---------------------AVMPNIQQIQLESGERPKGICFLTDKLLLILIGKQKSTDSTFLPSSKSDEYVIRLTVREVTLKEEFPVTVSENQSGYTTLSALLNKAERKKPIESLSPDICHQNLTANSSSQGGRPGSTFIKEIKRPPSSVCDDSIALETREAEPVDGSATLPKTSSTPDFTSTLGPLNLPPRKNLQREKEACQLSKELEILSRKLMEVQRSLSE----------LTDFLRNG-----KKSSPVYPLSEDLPYVHISYQKHYSVESVVEKLLCHGKLRLS-QQTFGL---------TLVEMLHDSILLPADSEGFILTFTAKQEILV........................................................................................................................ 676
5 -19.200PF16756.5; G7Q0Q7_MACFA/836-1183; Partner and localizer of BRCA2 WD40 domain  ali follow..  80.EVPVLQIVPVPDVYNLVCVALGNL-------EIREIRALLCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGENQFLMPPEETILTFAEVQGMQEALLGTTV----MNNIVIWNLKTGQLLKKMHIDSYQASVCHKAYSEMGLLFIVQSPVFQLIVINPKTTLSVGVMLPGQAGRFLEGDVKDQCAAAILSGTIAIWDLLLGQCTALLPPISDQHWSFKWSGTDSHLLA--GQKDGNIFVYH.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 348
6 -17.700PF17005.5; J8ZY85_EDHAE/6-349; WD40-like domain  ali follow..  11  1........................................................EELYSIDISK--NGQLIAFGGKSDTLTLAKFPSLI--SITSETSFTDSIIYVKFILNDVILCAT------LDGNLHVLENGEEV-----DNRDLEEDISFIDVIND--LVVVGTNKGSIHIFSQDLQNEILFVGQHSEIRDIKII--KGKLYSLSESHYMIFDLFTQGTLYKRSYKDFRTFNIV-CTALVDDYLVSGGSGFSLTIINIKSPSNCFNLRFNVEGISKIVRLSKNIVGIATFCGKIAIGDVRSGETFKFYDGVGIIYDMKFFRNYVAVCGNAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 292
7 -16.600PF04762.12; A5DLM0_PICGU/1-950; IKI3 family  ali follow..  10  69.DASLKSFAHFVDS-CQLVFAFSNGDIITATYDPTAPDPDTTIVEIVGSID-----AGIWAAEWSY--DEETFAVLTAEYKLVLLSRQTVGEIEQGILSTADLGVNTISWRG-DSAYLAVSTGEKYDRRVIRVFS---REGELDSVNEAVDGLEHNLAWRPQGHIASTQRHTDGIVFYE-HGEFNSRLDPDTNTIISLHWSSDSSVLAIDNTNRIQLWTTKNYHWYLKQEISFAEISFLKFHPEKPLHLMVGCPDSGTVMVTD------GSELKVTPMAVANVPPPMAYREIEIGECITDTACSS-SNELVVALTNNQNLASIAVPFEGPSKVLKKQSIAFARSTAAVLVDGDVQKVLFFDIDLDAKITFKDSMDTPAKIVLLKSSSNYDSWVLESSNGTVYRHINDEFQPVTRFPQLCRDFEMAVQDNNISAFGISANGKLFANETQICSGVTSIKVTENEKYQEFDEVAKTGSDERIRQIEQGSLLVTVMPSKYSVVLQA-G-----NLERVVRDFIRNKQFGEAFMACLHDYDRELFFDNVELFVKQINKVEHLDLFVSCIH--EEDVTKTKYRDTLGEVDDISANKICDAILKVLCKPAYFLQTIVTAYACQSPPNLTEALNLINSLQNSAQAESALEHLCFLQDVLKLYKTALG-------------IYNVKMTLAIAQKSQ-----MDPK------EYLPFLQNLH--RRRFLIDDFLKNHVKA....................................................... 942
8 -16.000PF08662.11; A0A0D1CK95_USTMA/232-427; Eukaryotic translation initiation factor eIF2A  ali follow..  11  10..........................................................................................................QIKWNKAGSALLFMTGKSYYGETNLYLMSVRGDFDCRVA--LDKEGPIHDFEWNPNSKEFIVIYGYMPAKAVLFSHRVNVIAELGTQPRNFVAFNPQGRLFCIAGSGTVDVWDRQELSKGKIFSMDASNSSVCQWSPDGHFLLTATLSPENGVKIWHCTGQLVHVDMIDE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 192
9 -15.400PF11768.8; A7S6S2_NEMVE/1-544; WD repeat-containing and planar cell polarity effector protein Fritz  ali follow..  83IPDHVCHAVLT--DSFVIFSFKDKAKLFFVSLGKKPSLDFKKLERLSALDPKMSFAELPRRLSVNQRQEMVLVTGERDRSNIIIFGISGSKLEILCYC-RTECDPVHVAFSFNQPHHVHTLPGSDDSSIDNCIYEYTKNKIERVVTTIPINAPVAVQARNHAEDKLLLGCQDGTLMLYDGHRKI-TQMTKAAVTPHHIRWHPADAIILVCSRGEIQVFDMALAPVMIQLLSENPQLDKVSWSCEAP........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 369
10 -14.500PF07433.11; Q1GEI0_RUEST/56-356; Protein of unknown function (DUF1513 topsan)  ali follow..  5........................................................DRGHAASAHPTRPEAVAFARRPGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVLYTTENDYARGAGVIGVWNAGDY--HRIGQFSSGGIGPHEMLLRRDAPGLVVANGGIETAKLNIPFMRPNLSYLRLSSIRHIAVRSDGAVGFAMQVPIVGLHQPGSAEDDPRLRNLNGYGGSIAFSGDET-AIAVTSPRGGVVQVMDCTSGALQAEHALSD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 257
11 -14.000PF12894.7; B6QBR5_TALMQ/41-156; Anaphase-promoting complex subunit 4 WD40 domain  ali follow..  11  1...........................................................................................................LTYCP-TMDLIALATE----DEQLYVFRLNSADLAGDPYLDEVKGEIRGVRWKNDGRLLAVADAENKLRIISSYTGKTVHFSCLPHEAEGHSSSPNESTKDPKDRITCIGWGVN.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 116
12 -13.600PF17034.5; YAG1_SCHPO/778-905; Zinc-ribbon like family  ali follow..  33  1....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CNFCRKPIFPFSNRQRGVSKAGPAKHLGKSCPHCGQPLPKCSVCG 55
13 -12.600PF08728.10; E7KI28_YEASA/125-948; CRT10  ali follow..  10  37.......LQFKNNGSYSFLAAGQCVEVHNFDVLLNNFRNSSYVKFKDTQFNSIPELCSINFMKICNFMHQDFLLACGDNGIVYIWEINKVIKIFNKFTSDILGGVEESCWSINGIIYIAVG----HNKPGVTVFAFDKDVKKERPLDLPSSHNVPCVNFVPNSKTLSYCSIFGNVVTVKLKEHDCTITQFFGDDLWTITPLTKKDFAKVDNFESLNLYQDGFKESMLYSICRDDFLLGYY-NAYLSGNFGIGTLLNQFVPVTDLRLTSSAGIPDEVIPLRFTSFDRNYTTTGSIKYEYSREDFALILHAGDLDDMNDAVTKNTSCEQHLHQWTFWEDSGYKHYRATERGFSKYKDIINTFPQLITPSGRNKTSQYQNTSGRKICEPFTYKLTDLENDIEDISREFNRSIRNLKMDKQRQLRTSKEFKSLSSVNHLPNIESGNFLWYNTDAAADWRTLFGKDLNTVLKDPEICSLQLNSTEEDDVNSDPENEESGSSLT-------SFQRRYRDTEQRAHLKSESQKSWGFHNYVRNVKRLLESVVPGSEDSPLGYQLSEMHDEFFFLTTAHRLVLMKANPLIIISATHH----EIFPLDGVVT-----CASKSLLQALNRINFVCHI---KELNCIA------ASQLGLISLLRLTSFRQEYILGWEVQDPVNPSPECRCNRNLFDAPMYGADGESSDTYCGVCDVYF-----MGDICGLDYTYASDSEELKRKGYATL.............................................. 811
14 -11.400PF11635.8; MED16_ASHGO/153-934; Mediator complex subunit 16  ali follow..  11..STILDFQWIGNQKPSVAQRDRTNNIFKNQMHQCPPY------------------------VFHPASIKSACIAIRRNGYIDLWYQFSNTLDFKKISLQLSKDKEQIAHTDKEQCFLIGVFS--NVAKSFAFYELLINWNVNTTNQAMFHDPKLTLRHILRVRPDALGPNGELLKLENFHVISKTALPGTRPEILIS---------LGTERSLVRRFQMVLSNPDMVFLTFDSKIMDIQ--SHSLDALVCFRLHNGRFQLYNRHTWAVESETADAKQIGGYTKDTIISPLLPPADAIEWCAISPSS--GIILKLKCKPQPTFYALEQSVLTDPSRDIVHATA-------------------AFEFVRFNNMIHSGEDLAIAAKTHVFRLQRLSEERAVNFIASVIGAILSGIHFDGPKEILEKLLQSKAIQKLGSHLKNKNVYSMAYASMKLRSINLAMNGVARNVHAMIQHTAVVNSLPNGRAFQFAFSKQDLIYSLIPSVNWFVS--TQQLIMLVNNPMDNTHSLVLGILSCITTRHLKVILELKN-----------MIGLITKFPETTYTVLNESSRFLRKALGDS-LEKFEVFLNEINNKFLSLLDDHG---AQSMDREPSFMVKAEIPPALGHVREFLLSF-------AGSALLAQTNLAEVFFASTHRIFDHQHFHPSVANLLQPPEKGLVVDDAILPDACRGSS--FSPLDYDDISSEWVDMSALVR----RCVRCGCVTRAGNPVAKNNTILETSIVTKRWTALYSR---YC-QC. 776
15 -10.600PF05280.11; Q63PR3_BURPS/1-173; Flagellar transcriptional activator (FlhC)  ali follow..  18  1...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MASKSVVVEVKELAIELIELGARLQLLETNLSRDRLIKLYKFMTWQPNIHSSLFYNIYRFMREHGGCDSIQSIVKAYRLYLEHVGLSDDEAVLSLTRAWTLVRFFDSGMLQMPCTRCGGHF-----------AHAHDPHHGYVCGLCQ.......... 161
16 -10.300PF12234.8; C0NL69_AJECG/639-1280; RAVE protein 1 C terminal  ali follow..  1...............................................................................GRVRTWTAKVDKQNLTSTVETGICNPSLASGASMRKAAIID-----QDRTRLTIWDTYGAQ--EFEEKFPQHDIIKDLDWTSHTQSILSVGFPHKVVLMSQLRYDYLDAGPSWTQIREIS----------------------------IRDLTPHPIGDSCWLGNGNLVVGS----GNQLFVYDKHIELSNRLVANLRLPARQIYVDLFGVVSRLNGTLP--VFHPQFLSQCILSGKSNLVHLILTSLYRKLIFYTEGDELDGFLDIPLEDIYQNEDAMKKVHWKEMPSSYGDFTTDCESSVVDETLGTALNENLMRVALPQLT------------------------STEQFRLVNIIECVATVDKHRRSMDDNAARYLLFFRQHVLRRSQGL-------------------PEQPTVSWREIVWALHSDSHEILVDLVSRQEHAKESGIFMWITDLNCLRAQLEVVARKSDEKNPIDCSLYYLALRKKSVLQGLWRMAGWNREQ-------SATQRLLSNNEPRWKTAALKNAYALKRRFPYAAAFF-------------------------LLADHLRDAVYVC---MNQLQDVQLAVAIA------RAYEGDD-----PVLKEILEERVLVDAASEGNRWMATW.......................................................... 543
17 -9.760PF04841.13; VPS16_SCHPO/8-420; Vps16, N-terminal region  ali follow..  13  17...AIGKAEWEYIDPVMFAVAPCGGAIAITRSESNLQSNYKYDQVPMYSICVFCDKTSLVGMGWNENEE---LIVVSKQGQVRVYNLLGEFHQFSLGKGVENIGIRECQFSEGGVFALL------QNDTFISITGFEEPWRKTYASIPFNTLALIPNPFSPDLGMDIVVTVGPHILQIDEQDSQ-LHSISSLQHVSHISISPNARYLALESVGKVRVISSDFSKELLPETVAEASLKQMAWCGND----AVVLVHENLLTLVGPFGGS..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 293
18 -9.540PF10647.9; D1BCN8_SANKS/337-589; Lipoprotein LpqB beta-propeller domain  ali follow..  22.AADPTALAISPDG-AQVLFRSGRTSIRTVATNAEPSQVLAG--------------KDLLAPSVDR--FGWMWSGDMLAGSPLQVVSPDGVVTAVPADWLDGRKVESVQVSRDGARIAVVSSDTSGTRIDVAGIVRGDTDLSDALVAGAAVVGASQVVWVDESTLAVLAGQSSGARTHLVPLAAHSEALSGVEGAEWIASGRGRRAYVVTADGELFNWT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 229
19 -9.280PF16755.5; G8ZS05_TORDC/24-383; Nucleoporin or Nuclear pore complex subunit NUP214=Nup159  ali follow..  13.YTSLQNLDISNEKCRYVATSGGKVVIGDLQSLREFIQNDENTEISFLWERELKDVMMVKF-----SVSEDVVIV-CKDGSVYTVDQNS-----LNDPKNIYKFDKALSQAQLFQSSLLA-----TIDDQLFSYNLAQSSLSSSI-----ADNLASFDIMDNELYLLLDDYSVQVKNLQNNHETIKKLSAPQEHPNIIKVLNKNQLLLVFGEKVSETDEDVMYDHKFFIVDHSADQPTFEPVPEYEVINVLASACSSEVTIQPSQDSERAVLPISKTTDNDTNPIGVSLDVSTHGVITDPCPGVDKIDRLIYILNDEGNLQIVGL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 359

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.