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Query: [R] KOG1492 C3H1-type Zn-finger protein, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRPFKQSKFSLVWTQNDPQPRMPIAHMRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLNISRKLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSKKESEKQSGQNNTSTASRNHLAHGRMTLFPANLKFFIIDFWFSGERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGKGVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDEHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRSTDSEVFGMESLDFITLGTAEYEAGDDNDPATVQSISSDSESLISIYNLITPVALMHSRGFRFVTFKDEKSMKDVIEGLAGQELDGRSITVIMAQLRGSGRGSEDTAAVVAVTQEKVVVAMELVVVTQEEVVVAVEAKEDTAAVLAVTQEVVVVAAEAKEDTAAVLAVRRIWWWSRRKRRWRMVIPYWFCLIWVLCVVFGFTFATLDVTGRVIKFDIWKRNGKSLFLVLast
1 -18.300PF15663.5; G1KZ30_ANOCA/1-109; Zinc-finger containing family  ali follow..  20  2.....................................................................................................................................................................................................................................................................SNKDDCYFYYY-STCSKGN-NCPFRHCEGNETVCVLWKEGRCFRSVCQFRHMEKKRSEIPCYWEKQPLGQKLNCAFHHTKGRFVDGLFLPPSKTAIPNAFE........................................................................................................................................................................................................................................................................................................ 106
2 -8.220PF17061.5; L9L768_TUPCH/3-296; PARM  ali follow..  10  35..................................................................................................................................................................................................................................................................................................................................................................................................QNTAAVTTSPDSGSHSSSVPPVPASAPTSPLPKNSSIEPKVGATSPALNQEVTDVSFTGLSSTTGGVHFTPTSPEEHDQSTAEASVPTTGSQSPTEPSTVTSTPAPASSPSSLSVSPPEISSVPVTSNHSSTATNIQPTGAPTAPASPTEEHSSGHTPTSHATVQPESKEKTPQATVLEPETCELMDTTTASPVVIMQEVEHALSSGSIAAITVT------------VIA-------VVLLVFGVA-AYLKIRGRLLDYGSWGNYNNPLY.. 291
3 -7.680PF10101.9; B2U841_RALPJ/177-938; Predicted membrane protein (DUF2339 topsan)  ali follow..  17  636...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ALRKLVPEPMVIGYAIGATLFIWANAVLLRTLHHWTHIPYTLDDLGASMLVQASLSMFWFATRRASR-----ALWFTLLGVTVVLFLFDLSRVTGVERIVSF------GVLLLLI 755
4 -7.570PF09586.10; Q839W8_ENTFA/19-846; Bacterial membrane protein YfhO  ali follow..  10  474..........................................................................................................................................................................................................................................................................................................................................KKENDTFYRLENLNGVSANDGINYGY--SSVRNRHSSTYLNALGFRSRGTNLNIRYQNNTLLMDALMGIKYNIAENNPMKFGFERQAAAGKLADKEIYNVRQPLNDNLGSQTNLLNALANTNERYFTFYQPTMTLQNNVTITQNTAGVTFTEKQHNVAKEISYTVNVPANTQAYLSLFPTDFAQLESSTATVTVNGSSQQSQIGITGQYYNLGYYPKDTTVNFKVSFYGTKAVSFVQPQVVGLNTNAFEKAISAVQEKGVDTTGKRSASGT--FTADKDQVLVTIPY-----WRVKI--G-AFLSVPVSGTQFSY----IPGIVLF.. 828
5 -7.320PF11086.8; C5BR94_TERTT/5-161; Protein of unknown function (DUF2878 topsan)  ali follow..  27  3................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................INSILFQGVWWVPRNTKFWGFCFPVWLLCIWLLAALLGFTLAPLSIGGANASLNLW-----ALVL. 155
6 -7.200PF12722.7; C5FVH3_ARTOC/1-827; High-temperature-induced dauer-formation protein  ali follow..  13  564...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ESGQQEIEQQNQLRKATSSSSGDFSTNSRTHARDSYEAGNGRRPLSHVPEEEDGTFAIGDDDSDEEGDGGQPASQVTSPTAESFCSAPVSPLDESVPLQLRGLSEKARGKMPAGQPTFSRQNSMTSLNSYAPTVTTNARGFVPTSAWIETWISHRHMFEWSPLSLGWYSLLW---FIFSAANSTPGTVG------VWNGTSIKLFRV 827
7 -6.910PF15759.5; G5BQB5_HETGA/102-601; TMEM108 family  ali follow..  11  181.................................................................................................................................................................................................................................................................................................................................................................................................AATTAPRSTSWVPPTTLLVPAEDKPGLSTADQGGGSIFTSPGRELNTTAAAGAPISSQATPVPSQHPHSDTQDSPSLSDSWLTVTSVTNRPLSASSKVFTAVIGPSQAAFNATVSAPSQGIPQGTSTTPQAPAHPPGVSESTVSLAEEEAAASPFMTDRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAANISHVAEGDKPHHRATICLSKMDIAW----------VIVPISSCLLTVCCM--NLSYITMDYFNRAVELEI---NGETLFV. 492
8 -6.890PF16131.5; F2PPW7_TRIEC/55-163; Torus domain  ali follow..  15  1...............................................................................................................................................................................................................................................RKRRPARVQVDPSTVKSEPPPQTGTIFNIWYNKWSG------------DREDKYLSQQPAESRCIAKDSGYTRADKITGSFFCIFFARGLCKGHECEYLHRLPGIH......................................................................................................................................................................................................................................................................................................................... 97
9 -6.800PF15817.5; TMM40_HUMAN/113-232; Transmembrane protein 40 family  ali follow..  18  1...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ELQLYGDAPGEVVPSGESGLRRRGSDPASGEVEASQLRRLNIKKDDEFALLVCYHYYADWFMSLGVGLTFASLETVG--IYFGLVYRIHSVLFI. 106
10 -6.790PF07220.11; D4HSK9_LEPIR/4-673; Protein of unknown function (DUF1420 topsan)  ali follow..  23  38...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ESSLGKVKNTWI------RWQA--PLIGALL--LSVIL-YPLALSALTPRLMKLSV--KNGSNIF.. 115
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.