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Query: [A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVRRLKVNELREELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTLast
1 -35.500PF00622.28; RYR2_RABIT/1425-1560; SPRY domain  ali follow..  16  1...............................................................................................................................................................................................................................................................TYYYSVRIFPG----------QEPANVWVGWITSDVTVTLGDEKGKVHESIKRSNCYGESMSPGQGRNNNGLEIGCVVDA---ASGLLTFIANGKELSTYYQVEP----STKLFPAVFAQPNVFQFELGR.......................................................................................................................... 135
2 -16.300PF07177.12; W4YX61_STRPU/311-475; Neuralized  ali follow..  10  8............................................................................................................................................................................................................................NISLSEDSSKASRTDAFNNGIVF----SSKPLVQGDF-FEVQVDR--------LARHWSGSLCIGLTTYHPDDSELKARGTWVMQGSDVRKNGVNIRSTLERLEIGHKVGVRLT----ADRCMHMVVNGEDLGQAAVDIPQG-----VYAIVELYGRVESIHL............................................................................................................................ 163
3 -15.300PF02037.27; A7TT99_VANPO/28-62; SAP domain  ali follow..  34  1..LENLKVSELKTICRAIQLTISGRKAELQDRIKDYL...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 35
4 -13.100PF12737.7; A8N2T2_COPC7/197-610; C-terminal domain of homeodomain 1  ali follow..  11  1...AELQFAFAQVTSNARTLYQKVSESSLAVTLDSAVKDMTPELKRQLQSEKRKKLQGEQAAAAYPSPERSPLSLQTHLSPSVSAPSLPERTSPTGKRRLSPTIDSDDERAERSKKRPRLDAPATTPPPSKRVSNSLPSPALSECAALNEGLATVEDTPSTSAPVEVSKKRKRRLSESDGTPCRKRPQNADNRPRPVAVSDP................................................................................................................................................................................................................................................................................................................. 199
5 -12.200PF05558.12; I1NLL8_ORYGL/3-193; DREPP plasma membrane polypeptide  ali follow..  6  4.........................KTKVLTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFVPKEEPKPEPEAEAAAETTSREVAVEEEKKEEEAAPAEPAAAAAEAAAPSTEVVEEKKEEE.......................................................................................................................................................................................................................................................................................................... 187
6 -12.000PF15323.6; H3AWY4_LATCH/19-240; Developmental protein  ali follow..  6  5LHPELLSRDFVLLTLQEKKIPIENEKDGLLDLYVQHVQRELPKSRWGRMMEKRREQQVGLFVQTKSLATDGSRKRPLIVFDGSSTSTSIKLKKNENGTADRLKPPPSGNTTNAIRRLSSLSSNSSSNSIIASPPRDTTVRKEETKPNRTPVNNNNNSSSTTVHLKSLPPSTSSSGTSIVKLKRAAPKGETEMGDLKPTEAKKK................................................................................................................................................................................................................................................................................................................ 215
7 -11.800PF06614.11; F7FEE8_MACMU/67-238; Neuromodulin  ali follow..  10  1.......................................NKKDEAPVADGVEKKGEGTTATEAAPATGSKPDEPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKESARQDEGKEEEPEADQE.......................................................................................................................................................................................................................................................................................................... 170
8 -11.800PF05466.12; F6R3X8_HORSE/2-233; Brain acid soluble protein 1 (BASP1 protein)  ali follow..  7  1.......................GGKLSKKKKGYNVNDEKAKDKDKKAEGAGTEEEGTPKENETQAAAETTEVKEGKEEKPEKDAQDAANKPEDKEGEKDADAAKEDAPKAEPEQTEGAAEGKPEPPKDAKDGEQEQAAASGPAAGGDAPKASEAEAPAEPAPTKVDDKSKEGGEPTKTEAPAAPAAQETKSDGAPASDSKPSSTEAAA.......................................................................................................................................................................................................................................................................................................... 186
9 -11.700PF15328.6; A0A2I2Y892_GORGO/27-241; Putative GRINL1B complex locus protein 2  ali follow..  7  4...RQERLLRNEKFICK--LPDKGKKFDSFAKLKAAIAECEEVRRKSELFHPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDNIKSSQTSQNQELGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPQHRVSSQAEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTQKKP............................................................................................................................................................................................................................................................................................................... 203
10 -11.400PF15622.6; L5KAG7_PTEAL/32-328; Kinetochore assembly subunit CENP-C N-terminal  ali follow..  8  2.........HLKNGYRRR-INMGGQN--ILVILQDCFEEKSLANDFSTNSTKSVLYSTPKIKDTCLPSPSREAQCQKSHPKSVPVSSRKKETSLQLTVEPNEAVSKSVHTHEVHQKTLATDVGSKNTPDSRKMSNKKLKDHHNEADEEFYLSVGSPSVLLDPKTSVSQNAISSIAQKRETYTFENSVNMLSSSTEISLKTKKRLNFEDKDI........................................................................................................................................................................................................................................................................................................ 210
11 -11.200PF05760.12; H3CP28_TETNG/5-296; Immediate early response protein (IER)  ali follow..  13  5VDAQSLKIHNSRTQ---RG----GIKNLLVS-LRNARQVYIKEKYAEIYRMQQYEEVMAVCNEIQELDPLELEAGDADDGDQARGVCCGEESSPCGSACHRDAAHARAASALPGCPRLEDANKEPESAYYRSCCAQPYPASHCAQVTAGGGSAQCTKTTVLDLDTHVVTTVENGYCDAPQWGQIAQSPTKKRKVEFGGCAPDAEEVSDFTATRKRPRREDGPFSGPDHADASNITN--FGSGFSG...................................................................................................................................................................................................................................................................... 262
12 -11.100PF02948.15; F7CBF9_CALJA/21-192; Amelogenin  ali follow..  8  2.....................................HPGHPGYINFSYEVLTPLKWYQSMIRPAYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVPAQQPVVPQQPMMPVPGQHSMIPTQHHQPNLPPPAQQPFQPQTVQPQPHQPMQPQSPVHPMQPLPPQPPLPPMFPMQPLPPMLPDLPLEAWPATDKTKREEVD........................................................................................................................................................................................................................................................................................................... 172
13 -10.900PF15512.6; F6U7T6_HORSE/381-555; Chromatin assembly factor complex 1 subunit p60, C-terminal  ali follow..  10  1.......................GIPLK--EKPVLSVRTPDTAKKTKSQTPQGSLPGPRLAEGTPTSRTQDPSSPGTPPPQVKQSPASTAAKDTPGTAPGARSSLPGSSEEKTLQPSSQNVKAHPSRRVTLNTLQAWSKTTPRRINLIPLKTDTPLNSVPNSIISTSATEEVQSEMPGDPQGSPPEPKRPRLSEHKEGPQ................................................................................................................................................................................................................................................................................................................... 175
14 -10.900PF15717.5; I3JV64_ORENI/1482-2091; Pericentriolar material 1 C terminus  ali follow..  6  286......TLKDCGEDLLVEISEILFNELAFFRLMQDLDNSTGIALAAKHKNKNRAEQNSKAKHSQKNNTAGGGDKSLSPAYTDEDKDQDEAEQEGASASQELYLQTQMKNSRSSEASEAEEDNEDEEGGREVPLSISLSKAETQALTNYGSGEDENEEEEIEEFEAGPVDVQTSLQASADGQAEQESTAAGTAASEAEEIRTEQRSSEND.......................................................................................................................................................................................................................................................................................................... 488
15 -10.800PF15762.5; G1P4D6_MYOLU/1-188; Domain of unknown function (DUF4691 topsan)  ali follow..  9  1..............MASAGTERRPGAQEGTAEGTAEGPAQLSEAPRGHVQSSECPVMGDQGLVSAHEVCGTQGEDKRPTGPVSEPELQEERPKLEEERLKPEVEALEERGPRPMASVVRSSHGPKRKPVNLPGPSHQAHPRAEAELPQGLPLQREDLEGSQSEPSPSTKQHKKAKKRKSLAAPVLPAVASTASAPSETLGLE................................................................................................................................................................................................................................................................................................................. 188
16 -10.800PF05395.12; W5N4Y1_LEPOC/11-190; Protein phosphatase inhibitor 1/DARPP-32  ali follow..  8  6..............................RKIQFSVPAPMPSQLDPRQVEMIRRRRPTPATLFRVSDNPSPEEEHISHQWVVGENGILKPKRSNPCVYHPPSLRAVQRMAQAHMQALGASPPLEDPPEGVESEDGPPEAEMCEDSPCTPAESPEETKSDPESGAFDEQQDPLLTGSEVTTEEEAVPQTPEPLGKPSAEREGEES.............................................................................................................................................................................................................................................................................................................. 180
17 -10.800PF15455.6; PRR19_BOVIN/1-363; Proline-rich 19  ali follow..  11  1MDPGRVRRRKTRRERNERGLFNHEVKSLDVARLLSSESLELGTPALTTKSSPSPGRGQQPSLQSRGKENQVPGGSGPGPPSPPQLPDLEQLLGELQCQLILPRAFPRRNLVQEARDAIVGTLQACHGCVPDLTLVLRGCQPHLPGTDPGALKRQRMTPSWINSPEQAPGEGRQRRRQGTKELTFAVPPTSSTPTVHQVSL................................................................................................................................................................................................................................................................................................................... 262
18 -10.800PF06632.12; Q5XI44_RAT/1-323; DNA double-strand break repair and V(D)J recombination protein XRCC4  ali follow..  10  164.KCVSDK-EALEADLYQR-LNEKKTK---IRSLLSEVQQLEKSTKPERETPSSDKIPEEDGLYDGSTDEESGAPVLGADTLDKDDSLFSSPDVTDIAPSRKRRHRMQTNLGTEPKMAPQELPLQEKERLGSSPPQTLKEEGTSAAKMSLETLRNSSPED............................................................................................................................................................................................................................................................................................................................................................ 320
19 -10.600PF06464.11; A0JM39_XENTR/9-128; DMAP1-binding Domain  ali follow..  9  10....RESLAELELELSEGDITQKGKRAKLLARYIPLIQGIVHGWVDPSLQAENKLAGSSQILITANKQQRSRSTSSRDERFRSDVHTEAVQAALAKYKERKMPMPSKRRS............................................................................................................................................................................................................................................................................................................................................................................................................. 118
20 -10.500PF08690.10; G3ATM9_SPAPN/9-310; GET complex subunit GET2  ali follow..  10  1.ELTEAEKRQLLRERRKAKMAKGQAS----DRLNNILSQGSSVKTNVKSVLDEEESVAKATSPSLSNEEDDPEIQDITSIAMQPPISPTPPIGEGTPEDIDAIFNKIFQQQQQQSGDFKEGDGNDPMANLMKMFSEGVPEPGLSRATTEKPFDQDPAIAKYQMELYEYQQYQHK............................................................................................................................................................................................................................................................................................................................................. 169
21 -10.500PF06390.12; GNAS3_MOUSE/1-257; Neuroendocrine-specific golgi protein P55 (NESP55)  ali follow..  9  1MDRRSRAQQWRRARHNYNDLPPIGRRAATALLWLSCSIALLRALASSNARAQQRAAQRRSFLNAHHRSAAAAAAAQVLPESSESESDHEHEEVEPELARPECLEYDQDDYETETDSETEPESDIESETEIETEPETEPETAPTTEPETEPEDERGPRGATFNQSLTQRLHALKLQSADASPRRAQPTTQEPESASEGEEPQRGPLDQDP.......................................................................................................................................................................................................................................................................................................... 210
22 -10.500PF16228.5; Q5HQV7_STAEQ/24-195; Domain of unknown function (DUF4887 topsan)  ali follow..  8  1................................IYSFVDSSKKGNERLSDKTTQQEKKKDDKDKKEKKDKKSVEEKKNNTQQTQQVPQTQQTQQTQQTVQTPQRPTTQTPVRQNPQTGEKRAKEPKTDERKKTRQDSSNSKESPNEKDQSSTQQKPQQNKSNQSSENRQSTQNKSNQTQSTRPQNNGNSGNQNASSGQNTQKQNN............................................................................................................................................................................................................................................................................................................... 172
23 -10.400PF14000.6; O64323_BPN15/3-141; DNA packaging protein FI  ali follow..  20  6..IARLN--ELGTQLN-REVSTSGTIQELTMRIAE-LEEELDGDATSVDGESGGQNAADSTDSTDSTDSTDSTDSDVADVEKVKSEAGTNGD............................................................................................................................................................................................................................................................................................................................................................................................................................... 91
24 -10.400PF12429.8; Q4CVZ4_TRYCC/733-962; Protein of unknown function (DUF3676 topsan)  ali follow..  8  2.................................DVSIASEPRSEESTASHEELTEDDTDEQEEGIVNDLLLAASSSKADAGSSVPESATAAQSAENSHQEDNAQFHQGKTAQQFTLNEAKESMQRDSDVQPQDPQPAELTEVTDVEMSPESNDTEQPEEEGEANDRSDGTTSPVASSLIMETVTGPADGEHQVQQSTELSAENDDVRST.......................................................................................................................................................................................................................................................................................................... 177
25 -10.300PF09595.10; VGLG_HMPVC/35-217; Metaviral_G glycoprotein  ali follow..  3  1............................LIGITTLSIALNIYLIINYTIQKTSSESEHHTSSPPTESNKEASTISTDNPDINPNSQHPTQQSTENPTLNPAASVSPSETEPASTPDTTNRLSSVDRSTAQPSESRTKTKPTVHTRNNPSTASSTQSPPRATTKAIRRATTFRMSSTGKRPTTTSVQSDSSTTTQNHEETGSANPQASVSTM........................................................................................................................................................................................................................................................................................................ 183
26 -10.300PF15140.6; ERIC5_MOUSE/95-251; Domain of unknown function (DUF4573 topsan)  ali follow..  8  1....................................................ATDHSRPTKKIEPLVQGGECEQPQPGGKDDMLGTEEVKKDVEARTEVPSLKGDAEIKPLRLSSERDSPGAPQAGTMKFLQTAENILPLETTQELPPKEATGKGAQPQILEAIPKENSSPEIEGIQSAESSGQQQLVEAPGEAEQPQALETVLKENET.......................................................................................................................................................................................................................................................................................................... 157
27 -10.300PF02063.17; W5NK27_LEPOC/2-285; MARCKS family  ali follow..  7  114.....................................SSETPKKKKKRFSFKKSFKLSGFSFKKTKKETGEGAENDGAASTDEGKDEAAATPGAADAAEEGKPAQEEAKDEAAAAVEEAKEEASPSQEAKSEEAAPEQAAAEEPKAAPAAEEPKAKEESVAEEKPAEPAAAETKAAPAAEQEAPKAEEPASATQEPAPASSPEAPAAE........................................................................................................................................................................................................................................................................................................... 284
28 -10.300PF16601.5; H0XAD4_OTOGA/548-737; Rabosyn-5 repeating NPF sequence-motif  ali follow..  6  11.....................................QLQAGREPRTHLAYALDLGSSPVQSSTAPKTPSPCSAQEPVQIWSGPPVLGQEFLPQSSISQQDEVPSLNPFDEEDFSSPTEEATASAPATELSSGPSAYIPKVYNPFEEEEEEEAAPFTHPDSPVPNPFDEEDEHPHPRSSSPLVPGNPFEEPTCTNPFEVDSDSGPEAEELIEEE..................................................................................................................................................................................................................................................................................................... 187
29 -10.300PF05279.11; ASPH_MOUSE/52-307; Aspartyl beta-hydroxylase N-terminal region  ali follow..  11  17MVIALLGVWT----------SVAVVWFDLVEEVLGKLGVYDADGDGDFDVDDAKVLLGLKERSPSERTFPPEEEAETHAELEEQAPEGADIQNVEDEVKEQIQSLLQESVHTDHDLEADGLAGEPQPEVEDFLTVTDSDDRFEDLEPGTVHEEIEDTYHVEDTASQNHPNDMEEMTNEQENSDPSEAVTDAGVLLPHAEEVRHQDYDEP.......................................................................................................................................................................................................................................................................................................... 217
30 -10.200PF14963.6; H3DF96_TETNG/13-269; Calcium signal-modulating cyclophilin ligand  ali follow..  11  3........AQKRAEIRRRKLLMNSE-----ERMNRIVGCTTNSSENHEPRFHLDLDRTEPVSSSSSPKRSSAHGSRSHSATPERRASPLPGFSESLGGSLEDDLAGIRKRTRGDRVSDDLNSSARPGLQKYLSRFDDAMKLRGQLASEKPVQDRGSDAEE........................................................................................................................................................................................................................................................................................................................................................... 149
31 -10.200PF12300.8; RHLB_XANCP/377-551; ATP-dependent RNA helicase RhlB  ali follow..  10  1.................................EQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFREAREQRAADEARRGGGRSGPGGASRSGSGGGRRDGAGADGKPRPPRRKPRVEGEADPAAAPSETPVVVAAAAETPAVTAAEGERAPRKRRRRRNGRPVEGAEPVVASTPVPAPAAPRKPTQVVAKPVRAAAK........................................................................................................................................................................................................................................................................................................... 175
32 -10.200PF05793.12; T2FA_XENLA/2-524; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)  ali follow..  10  152...RTLTAEEAEQEWERRNKVLNHFTIMQQRRLKDQVGDEDEDEEGGGKLEKGGKGKKKKKKSDLKIHDLEDDLELSSTESENSDEEGESRKKPQKKVPAKGGKKKKRKSDDEALEDSDDGDFEGQEVDYMSDESSSDEELPGKIKPAKEEEGPKGLDEQSESSEESEEEKAEEEEGEEEKKAPTPQDNKKKKKGDSSDESETSEDSDI.......................................................................................................................................................................................................................................................................................................... 357
33 -10.200PF11235.8; H3B103_LATCH/224-387; Mediator complex subunit 25 synapsin 1  ali follow..  5  1............................................GGGATSATQSKQVVPQAPPTVQSQTSLLSTPSQPSQLPPGSAQQVAPPGSLSAAQAAAKMAVEAANSQKPGLATRFFSSAVPNLSQHPNTSGVGPPFSQPPVPTMTPGPISKMPPSTASLIPMTSQASLLPQQQQSQQPSQPSQQPLQPGGVPPGPVNVPQPGA........................................................................................................................................................................................................................................................................................................... 164
34 -10.200PF10208.9; F7C1L4_XENTR/46-191; Degradation arginine-rich protein for mis-folding  ali follow..  26  103.DLKKLKVKELKKILDDWGESCKGEKSDFIRKINELMPKYAPN................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 146
35 -10.100PF00985.17; MSA2_PLAF7/102-272; Merozoite Surface Antigen 2 (MSA-2) family  ali follow..  5  1................................................TTTTTTTNDAEASTSTSSENPNHKNAETNPKGKGEVQEPNQANKETQNNSNVQQDSQTKSNVPPTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQHGHMHGSRNNHPQNTSDSQKECTDGNKENCGAATSLLNNSSNIASINK................................................................................................................................................................................................................................................................................................................. 154
36 -10.100PF15623.6; F7G021_CALJA/1-281; Cancer/testis gene family 47  ali follow..  10  105AAARHYPIVGFRLQF----LD-------MVHNFLHRIYHND---RFRGSRLMVGPHPVMPSSDEPPLLVSERLGAGARAPESDDLGLIEEAEVVPEPEVPANLVEMAREPEEEPAEEAAEGKPSGEEPAEEAVPKAATEEPASAEEPATQEAAAPEEVTKYQYEKWDEEVQGAAGEEEKEQGKEKDA................................................................................................................................................................................................................................................................................................................................ 281
37 -10.000PF15662.5; H2P8V7_PONAB/1-182; Spermatogenesis-associated protein 3 family  ali follow..  6  1................................MKKVKKKRSEARRHQDSTSPHASSNSTSQQPSPESTPQQPSPESTPQQSSLETTSRQPASQALPAPEIRRSSRCLLSPDANVKAAPQSRKAGPLTRAGPHSCSCATCPCSSACWRRLGLCHSRIFDVLLPRDWQMAPGRGLPNLLTFYRKPSRKPSSHRNVCPPSPR.................................................................................................................................................................................................................................................................................................................... 167
38 -9.960PF17037.5; E0SES2_DICD3/1-201; Cellulose biosynthesis protein BcsO  ali follow..  5  6.DMQRFK-----DKAQIKDINFMDMSGQIMKQLLRQTGDDTLSGAQPVSIAQPVPVSQHVLSAPASPRRVTPSSSLNVNADPSGGNQHSLFNAIAASLPAESPAPQPIAPPTPVSQPQPAVRPHPLASAPAVSEASAASEAGRFRQLFSRHHHDEIHSVSKTM........................................................................................................................................................................................................................................................................................................................................................ 172
39 -9.920PF04931.13; K2SXE2_MACPH/89-879; DNA polymerase phi  ali follow..  6  579.DKSAFQLTEVLLSFAAKPLTAEGLH-SMIDILSKKESMSGQQDLFDQQGSEDGEDASEDDEDEQDSDVEMVEADGSDVEEVEEASDVDEEEEEDEDEEGGEDGSDADDEELEKFNAALAKTLNTSMLTGEGEDSDDDDEADMDDDQMMALEPHLTKIFKQRQEAANKSKKKDNKDAKAT....................................................................................................................................................................................................................................................................................................................................... 775
40 -9.860PF05460.13; Q75D89_ASHGO/10-395; Origin recognition complex subunit 6 (ORC6)  ali follow..  7  23......RMAATTATLYNVSLNKVMLKQPAAEKLSEKYEPELQYYREKIPLEPRKTVKLVGLFKQTLWTSSPVRNLNLSPSPKKDGGRLSARDPVELRAELFGTPVKRAGAVTLPGAGELSPTKQLSPSKPMSPVKPSPRRRLAFEDEDEDYEPDASPQPSPRRSIFPGGFEPDPDESEFDSPTKSPFKSPTRSPTKSAQSSPRKKRGEY.......................................................................................................................................................................................................................................................................................................... 237
41 -9.790PF05104.12; G3NLP1_GASAC/33-177; Ribosome receptor lysine/proline rich region  ali follow..  5  1................................MKETSYEEALAKQRSELGKIHSARSDKKKKDKVSEKKGRGKKKEDKPNGKIPEPDETQEDVEADVVVEPAAAPVVAAAPEPERVPDLDVKPNAATAAPEPTTAPEPSPAVIERSPAPSPKEKKKKKVAKAEPASSQAAPLVVASA.......................................................................................................................................................................................................................................................................................................................................... 145
42 -9.780PF07376.11; M1CYC0_SOLTU/1-202; Prosystemin  ali follow..  6  1.......METPSYDIKNKGDDMQEELKVKLHHEKGGDEKEKIIEKETPSQDIKNKDTITSYVLRDDAPEIPKVEHEEGGDGKEKIVEKETISKCIIKIEGDDAQEKLKVEYEEEEYEKEKIVEKGSPSQDINNKGDDPQEKPMVEHEEGDEKETPSQDIIKIEGEGAQEITKVVCEEREKIVVQVDLAVHSTPPSKRDPPKMQTDNNK........................................................................................................................................................................................................................................................................................................... 201
43 -9.780PF06513.11; Q25920_PLAFA/526-740; Repeat of unknown function (DUF1103 topsan)  ali follow..  7  1.........KVLGEGDKEDVKEKNDGKKDKVIGSEKTQKEIKEKVEKRVKKKCKKKVKKGIKENDTEGNDKVKGPEIIIEEVKEEIKKQVEDGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEDGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEEGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEEGVKENDTESKDKVIGQEI.......................................................................................................................................................................................................................................................................................................... 200
44 -9.760PF06512.13; G3VW50_SARHA/909-1162; Sodium ion transport-associated  ali follow..  7  3.ELNNLQIALAR----QKFAH---VGQAIRDFWGRKFWTSKAKEEKQKQMVKMALSESRAPNHMTTQLLTSVGRVKDNPAPNGLALELAM-----------CPVNDPGNFMINSNTEISVPIATAESDLEDDDDDDEPSSQNCLKTYSLKKEHEVPPQEGRRLQESNHHLTSDTSSEDLALYLDKQWKDIQSVGSPTEKGDVSSCSEGSTVDIPDPEIILKKITDLSESLEEP-TERLPGSFFWNLRKT.................................................................................................................................................................................................................................................................. 251
45 -9.760PF16629.5; G1N4L7_MELGA/523-813; Armadillo-associated region on APC  ali follow..  10  21LHVRKQKA--LEAELDAQHL------SETFDNIDNLSPKASHRNKQRHKQNVYSEYVLDSNRHDDGVCRTESFSTGNVTVLSPYLNSTVLPGSSSSSRGNIENCLSEKDRSLDRDRAVGLNAYHPATENSGNSSKRVGMQISTAAAQIAKVMEEVTSMHIPQEDRGSSSPSEMHCLTEDRNTTRRAASAHTHSNTYFPKSENSS............................................................................................................................................................................................................................................................................................................... 216
46 -9.690PF15724.5; L5JX75_PTEAL/24-275; TMEM119 family  ali follow..  9  62......GIVDFRQYV----AVVGSLVFLLMFIVCAALITRQKHKASAYYPSSFPKKKYVDQNDRAGGPQAFSEVPDKDPDGRPEEALDSSQQLQADILAATQNLKSPARVASSSGNGARVTEGKSEEEEKGSQEADREAEGRGVSVERAEVAEDPCLAVVEGAVGAGEGPGEPEAAPSLSQEAEGPAGPPESPCAC....................................................................................................................................................................................................................................................................................................................... 251
47 -9.670PF15310.6; F1PR57_CANLF/106-353; Vitamin A-deficiency (VAD) rat model signalling  ali follow..  8  14VQTSK-KLIQASEHSLERMTDTQLGKNK--GKTISHLGQQSVPKDTTCSKKQLQTPSAQPAPPATDSQQLPNPYPSSSSLSPAIGLEELVNFASSLAVASSSKMDLPNLEHMIKAPPQKAEAPSTDPTTQVAVDQPEKKKLTKELPDRPPLKARESQKAQKPQDKNFSHPYLDFSKPGIKRATIKGEVKLLQPPAMSPLPQGDMKDS............................................................................................................................................................................................................................................................................................................ 223
48 -9.660PF14642.6; F7IBJ2_CALJA/1-253; FAM47 family  ali follow..  9  31...GKLKLPPPNTEFMKGGMDDEFSLLKICNRGTYADPQSRPKKPLKEAALFSKLSPARLARKVSLEEVEDQLTAECFLARSRSPREDTPPDLLRQVLKPQDPERKLEGTWACCEDWEKATKEPTEPGKYPWEFYPWPPETRVPHLCPEPPKTPVSHLHQGPPKTCWMSHFCPEPPETCVSPLRLEPPKTGVSHLCLEPPKTGVS.............................................................................................................................................................................................................................................................................................................. 252
49 -9.660PF15231.6; F7IG15_CALJA/1-142; Variable charge X/Y family  ali follow..  5  1................................MAPKKRASGPPAKAGETRKRKSSSEASPSTPKKKPQMPKEGKRGKAGPGGRGRKKRAAGEKMAAVGAPEAGSGPAPPGPSKPRSQELPPQELPPCQPVSEPDPLSQETQLEDPLNQETQLEEPLSDETQLEDPLRQETQLEE............................................................................................................................................................................................................................................................................................................................................. 142
50 -9.650PF15234.6; F7EVW8_CALJA/35-269; Linker for activation of T-cells  ali follow..  10  1MEETILV---VLGLL----LPILAVLMALCVHCHRLPGSYDSTSSDSLYPRGIQIKRPYTLAPRPPTYPPVTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRRDSDGANSVPSYENEEPACEDADEDEDEDDYHNPGYLVVLPDSAPAASTAAPPAPALSTSGLRDSAFSMESVDDYVNVPESGESAEASLDGSREYVNVSQELHPGVA.......................................................................................................................................................................................................................................................................................................... 205
51 -9.630PF15501.6; F7D2B6_HORSE/4-537; Nuclear protein MDM1  ali follow..  9  327......QVKELREKARKRVQGTHFSRDHLNQILSDNNDVSSTTSSEGTVSSNIRALDLAGDPTSHKTLQKCPSTKLEEKRSVLEDQPQKNTTEKLGVSDAPTTPVRRRLAWDAEDANEDTQEQPREEEEQREGDRQDSPGELEKLEVREKSKVDEVKEGSDSSSVSSGMDGRLPTPKLRELGGIQRTHHDLTTPA........................................................................................................................................................................................................................................................................................................................ 521
52 -9.590PF17532.2; A0A0C7T7K4_EBVG/1-148; Family of unknown function (DUF5451 topsan)  ali follow..  6  3........................................................PPVRQRPAQAPPAKRQALETVPHPQNRGRLMSPKARPPRMQRRPRPPVAKRRRFPRSPQQVERPILPPVESTPQDMEPGQVQSPPQITGMIQLCQDRYTMRPPIYLPALLANCGPAGLLRAHRLPQPKPPCQSRQRPSPDSQIS................................................................................................................................................................................................................................................................................................................... 146
53 -9.570PF12287.8; W5KCG7_ASTMX/360-690; Cytoplasmic activation/proliferation-associated protein-1 C term  ali follow..  8  1.......VQDLMAQMQ-------GPYNFMQDSMLEFDAQSLDAAVVSAQPMNPVKSMEVPQMVCPSAHPQSHLAQPLTVPVQTESTQVSIVSPSPEAYSSPPPSYQTSHTADPRPRADSEDPIHVPISLTEHPPSSTALAGTSQPQVFQPSSKPLCNSGINVNAAPFQSMQTCLNIFNRSFPEPGMICDSCMINVFTPKEHTLDLFPEK.......................................................................................................................................................................................................................................................................................................... 195
54 -9.560PF06121.14; I3N7Y4_ICTTR/15-202; Domain of Unknown Function (DUF959 topsan)  ali follow..  9  1..............LLTCCLVPSWADLLTLDWLWSTDLADSRDTLVSQPQGSLPVQPAAAPATHVAPQDDPAEQRTAPASPRPPLENPKAAPSRAPGAPISAAASAAPAASPDTREENVAGVGAKILSIAQGIQSIVQLWNEATPTQSSAGSASAPTDPLTLAGPSGPPEESGTTLGPHRGAPGSLGTWTAESGTLAVPTQS................................................................................................................................................................................................................................................................................................................. 188
55 -9.550PF05568.11; Q65273_ASF/1-189; African swine fever virus J13L protein  ali follow..  2  1...................MDSEFFQPVYPRHYGECLSPVSTPSFFSTHMYTILIAIVVLIIIIIVLIYLFSSRKKKAAAAIEEEDIQFINPYQDQQWSEVTPQPGTSKPAGATTASAGKPVTDRPATNRLVADRPATNRPVMDNPVMATGGPEAASATASAAASDPAYPAEPYTTVTTQNTASQTMSAIENLRQRSTYTHKDLENS............................................................................................................................................................................................................................................................................................................ 188
56 -9.550PF04880.13; G7XHM6_ASPKW/134-306; NUDE protein, C-terminal conserved region  ali follow..  11  19LE-DEVKAGELRDELSEQKLDNE----ILQEKLRHEQYGGRRKKPTPLSRTSSSTPQAPEIFDRSPGTSAVSSPLFVRTPMKSSLMGVTAAPPSPPMSETSVSVTNMMANMRKTVHATAGFPLQKASGSESLMGSRSMYDARPNKSS........................................................................................................................................................................................................................................................................................................................................................................ 172
57 -9.530PF15620.6; L8YCT1_TUPCH/224-477; Centromere assembly component CENP-C middle DNMT3B-binding region  ali follow..  5  1.....LKLLE-ERSFASRSWITIPRKAGHLNQRPVSPAENPAPLQAKKSREKHHSVLPETLTNGIHSHGAHPVEKSQPSDQENLCTNCALTDEMENSCRSTKYKMCSENAEKSPGNKRTVKQKQRTKSKDSIDKDQLDVGQSKDGNMSHIAQKKLQRNSDRNTEECEEKRNNRISKKQMPSMGSKNSTKKDKEESKKKRFSSGSKNKVE.......................................................................................................................................................................................................................................................................................................... 211
58 -9.420PF07222.12; F5H5S8_HUMAN/1-240; Proacrosin binding protein sp32  ali follow..  7  72......TLVQL-DQYENHGLVPDG---AVCSNLPYASWFESFCQFTHYRCSNHVYYAKRVLCSQPVSILSPNTLKEIEASAEVSPTTMTSPISPHFTVTERQTFQPWPERLSNNVEELLQSSLSLGGQEQAPEHKQEQGVEHRQEPTQEHKQEEGQKQEEQEEEQEEEGKQEEGQGTKE........................................................................................................................................................................................................................................................................................................................................ 240
59 -9.410PF04538.12; H0W9V3_CAVPO/1-176; Brain expressed X-linked like family  ali follow..  6  1.............................MKKLCSGNEGKPEKERKAEDKLEPDDEGKIEKEEKTDHEGKPAFEGKLEGEGEPNVERQGKNEGKPEMQSKLGDEGSPQGEGNAESQARPENKQLPAEKHLAEDYVPRKAKRKTDRGTEDSPKDSQENLQDTHLSREEMMREFADMSRGQEELRKKQRINNFYWMQRELLDAYPPR.............................................................................................................................................................................................................................................................................................................. 176
60 -9.330PF15677.5; H2NCC0_PONAB/1-152; Cell cycle exit and neuronal differentiation protein 1  ali follow..  8  1....................................MESRGKSASSPKPDTKVPQATTEAKVPPAADGKAPLTKSSKKEAPAEKQQPPAAPTTAPAKKTPAKADPALLNNHSNLKPAPTAPTVPSSPDATPEPKGPGDGAEEDEAASGGPGGRGPWSCENFNPLLVAGGVAVAAIALILGVAFLARKK............................................................................................................................................................................................................................................................................................................................... 152
61 -9.300PF15429.6; CA226_HUMAN/1-272; Domain of unknown function (DUF4628 topsan)  ali follow..  9  61......KVNDFLRRKEPSSLGSVGVTEI--KTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPISLAESWEDGSPPPQARTSSLDNE.......................................................................................................................................................................................................................................................................................................... 262
62 -9.300PF09310.10; Q90ZH6_CHICK/7-255; POU domain, class 2, associating factor 1  ali follow..  10  15VRVKE-PVKELLKR--KRGNVHNATAACIDVDAAAPALPGAEEGALCSSWLSQPSPSSLQPLTQWTTYPDYVSHEAASCPYTADMYIQPMCPSYTLVGPSSVLTYASQPLITNFTPRSSTPAVVPQLEVTEQQPPLTYFPWAQPLSALPAPTLQYQPASSTLPTPQFVPLPISIPEPAPQELEDARRVIGTLPIEKLLLEDEDNDT............................................................................................................................................................................................................................................................................................................. 238
63 -9.150PF14962.6; H0WJV0_OTOGA/1-192; Mitochondria Localisation Sequence  ali follow..  10  71.........................QAKHTEHITNMKEKTKAELHPLQGEKEHIAEAEKASPEAPEVSVVEAEVVAAEEIPDATVAALTEASACPGGVEAAPETAASGAETAPEVPEAVVGDTTEEVSAGTTPEVTDPTLGEAVAID........................................................................................................................................................................................................................................................................................................................................................................ 192
64 -9.140PF06933.11; O44418_CHIPA/1-756; Special lobe-specific silk protein SSP160  ali follow..  7  1MNIKVILVCAL-AQVAEGGANFVGFVISLLFSLFEVMVSVVFDVKSFTSLSTPTCNSTVPSFATRVGGGRFSGIITASFNMIAMISANVQAIQSGSGSTSGSSSSSTTSTSNSTTTTSNSTTTTTNSTTSSNSTSSGLTSSASVVSLIDTIAWVYQDSSVGIAYLMVSILALFYGQSVSAPPYPDLGIPALPANCSGPGVPQSVQIRAA.......................................................................................................................................................................................................................................................................................................... 215
65 -9.130PF05609.12; G1QDE7_MYOLU/26-480; Lamina-associated polypeptide 1C (LAP1C)  ali follow..  5  1..................................KDLENDPSINSQAQETTVTASTTKEAQILSPASGLNKDHQEVETIGSGSADTSNQSESPDEASYGNYPKDKTELKTNQSFQDGKLGHQLSSKKSGGEESLHPEPSCCPSEEVGRADAQLGSSSVDLPEEASNRPEASQKPLAVDPQGVRGPDHSSAGPESQGTRRRRLVEPGEGS.......................................................................................................................................................................................................................................................................................................... 175
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;