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Query: [R] KOG2897 DNA-binding protein YL1 and related proteins, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGDNLast
1 -86.900PF05764.13; N1QID7_SPHMS/24-277; YL1 nuclear protein  ali follow..  21  1....RAKRSTAGNLYHSLIQPNLDDDALRNEL--EDEEGDEGEFEGSDKDTDDALSSSDDDEDAGPPQEGDKEDLAGERELKRQEREQLKQARQKRKMEEASTPGPSKSNKKKKSERQDWRPTEAEMPVRQSTRSTAVANREMVHSNLVESIKRSEKQKREKANARSDLTQEERFAKAAKIEKETAKEFGKLQREEAERQRLREERRVIDGPVIRHWS..................................................................................................................................... 254
2 -28.700PF08265.11; F0XUF9_GROCL/703-731; YL1 nuclear protein C-terminal domain  ali follow..  44  1...................................................................................................................................................................................................................................................................................LCSITGYPARYRDVQTGLPFYNSYAYKEI............................................... 29
3 -11.700PF04931.13; K2SXE2_MACPH/89-879; DNA polymerase phi  ali follow..  10  619............EGLHSMIDILSKKESMSGQQDLFDQQGSEDGEDASEDDEDEQDSDVEMVEADGSDVEEVEEASDVDEEEEEDEDEEGGEDGSDADDEELEKFNAALAKTLNTSMLTGEGEDSDDDDEADMDDDQMMALEPHLTKIFKQRQEAANKSKKKDNKDAKATMINDLLL............................................................................................................................................................................... 788
4 -11.400PF14963.6; H3DF96_TETNG/13-269; Calcium signal-modulating cyclophilin ligand  ali follow..  4  3AQKRAEIRMNSEERMNRIVGCTTNSSENHEPRFHLDLDRTEPVSSSSSPKRSSAHGSRSHSATPERRASPLPGFSESLGGSLEDDLAGIRKRTRGDRVSDDLNSSARPGLQKYLSRFDDAMKLRGQLASEKPVQDRGSDAEE................................................................................................................................................................................................................. 149
5 -11.300PF06524.12; B7QNY2_IXOSC/1-301; NOA36 protein  ali follow..  21  226..LSMSTRHHSYGRQAMSSGRDDDEDDGYDGGAGYYGSGGGGGDLDDEDEDDDEDDDDDDDDEDEESDEDESSDEKE.................................................................................................................................................................................................................................................................................. 301
6 -10.600PF07767.11; B6JVB6_SCHJY/16-392; Nop53 (60S ribosomal biogenesis)  ali follow..  9  180.........DPGMSYNSLLERKGQEEAAKEQMRLEREKQEARVRLIAASKQEDFRVDIPDEDASSESEQEEKQKTSEVTLRDTPKRKTRAQRNKEKRRREQEREEQRLKQMQELEKQIEKAPEMATEIANLEPSSSSETLELVQKTTTTVVTELKVRKRRLGKHAIPEAPLELKLGD----ESGSLRQLK................................................................................................................................................................. 364
7 -10.500PF10446.9; K1X719_MARBU/320-790; Protein of unknown function (DUF2457 topsan)  ali follow..  19  25.....RAKLTIGDTLKK-LGTEAEEEAL-------EEEEEEEEEEDLEDIDEGDASGSDDENDDDDDGDEDDDQE.................................................................................................................................................................................................................................................................................... 92
8 -10.300PF04438.16; B4GBH8_DROPE/131-162; HIT zinc finger  ali follow..  20  1................................................................................................................................................................................................................................................................................PAQFCCISDNRKAYSCSKTNVPLCSLVCYR................................................. 32
9 -9.440PF05285.12; N4VPN5_COLOR/422-738; SDA1  ali follow..  12  40......MKKDRGKDASELLAKWKEEQRKLRREAKGLPAEGSDKDDDEDDGFNSDDWDVESVGSSDSGGWINVDHSSDEEEDEPAPKKRKTGEDGSEAEDEAEEEDEEAELERIQKLATTTILTPADLQKLQELRMEASINKTMGNRTSKRSKEIEKALARHVDDKLRKTTKEERVAMAKE-EKARQKNFLMTLSKAKHKNKRSLVQTR............................................................................................................................................... 304
10 -8.460PF09306.10; J7U2W5_MORMO/1-303; Bacteriophage, scaffolding protein  ali follow..  13  13...................ELTLSGDQAAASADGSVVDNANDNAGQEEGFDIVLKDDEGKPKQDPATNAEFARRRIERKRQRELEQQMEAVKRGELPEHLRVNPELPKQPDPNDFFSDESLAKYDFDQNRALAAFQQANSDWQMKAMDARSNAVAEQGRKTQEYTQQSAQYVEAARK.............................................................................................................................................................................. 170
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.