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Query: [Z] KOG3155 Actin-related protein Arp2/3 complex, subunit ARPC3, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPAFHSEIEDFQASVGNMALLPLRTQVRGPAPTVDIPNDIIDESLYFWKSNIFFRTYEVKSEVDRVLIYITLYITECLKRLARCTSKSQGQQELYTLAISRFDIPGDAGFPLNGIYTKPEDPELMRQYFLQLRQETGNRLLEKVFDTPDGKPSKWWICFAKKKFMEKSLSGPGMLast
1 -104.000PF04062.14; Q6CDY5_YARLI/1-175; ARP2/3 complex ARPC3 (21 kDa) subunit  ali follow..  44  1MPALNSTFLGEDRVVGNFAILPIKTSFRGPSYPSNADYDIIDEVLDLFRANSFFKNFEIKGPADRALIYGILFVSECLGKLKPTTSANEANKLLNTAAVEHFSIPGDAGFPLNSLYAPPNEVELLRGYLMQFRQELAKRLIEKIYKDDPSKPNKYWLAFTRRHFMNKSL..... 175
2 -6.970PF18352.1; E1SG32_PANVC/31-132; Phage protein Gp138 N-terminal domain  ali follow..  10  1LPGIIESFDPKSCTCTVQPALRGQLTDSSGNYSSSALPLLVDVPVIFPRGGGCTITFPIA-AGDECLV---IFSDRCIDFWWQNGGVQETVDPRMHDLSDAFAIVG.................................................................... 102
3 -6.840PF05083.13; LST1_HUMAN/16-96; LST-1 protein  ali follow..  22  4.................................................................LLLLAVVLLSACLKRLERSWAQGSSEQELHYASLQRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENK....................................... 80
4 -6.520PF11951.8; Q6C9N8_YARLI/315-798; Fungal specific transcription factor domain  ali follow..  7  316.......................SFRQKKGTNYESEQIRVLEQDLLQWRFEKSKIAIPSFNDNRKAVLHLVIYFYRLVLGWPASSLQDRVKYLMHILLEMQNFKSKVAGFVGACEALTEDTRQGYTKYIQDLAEYVPRNVITEAWRLQDKGEESNWWDIVRDWEAH........ 482
5 -6.110PF11536.8; Q5JEB1_THEKO/3-242; Protein of unknown function (DUF3226 topsan)  ali follow..  14  95....................................DVDTEESILNWAKSTLQSGGFEPDVKDGYLMINGIKVIPFGIGEVDFDARDIDLKKELELLMALLAKKESSLSKLEGSI------SQLRKDLGRKLTPKDIMHLLAIARNYGGDSMSGLYRNFENRELVEEFLNESGL 232
6 -5.940PF16294.5; T1JN81_STRMM/282-377; RNSP1-SAP18 binding (RSB) motif  ali follow..  17  38....................................................................................................................EGKEKKERKVSVDRKKEEEAPAKLLDDLFKKTKSTPCIYWLPLTLEQFKQRD...... 89
7 -5.740PF11091.8; C4MZT5_9CAUD/2-356; Tail-tube assembly protein  ali follow..  7  174.....ESVTNGVMADSGEQIYTARSMYAGPTPRNAQDLIQIIKIYEIFNYYSYGETGNSAFAGELKEKIDTWYRSTFKKEAIDNFDGKLLGEGITSFLSNVIVVSNPTIWYIRNFGNTSSYDGREDIFIQSIRFDKTPDGHFNGLAIAPNLPST--VTFREIITLNRG...... 354
8 -5.730PF01095.19; PME42_ARATH/215-510; Pectinesterase  ali follow..  13  75.....RTFYTATFASNGKGFIGVDMCFRNTVGPAKGPAVALQDALYPHIDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPNMGQSN----FITAQSRETKDDKSGFSIQNCNITASSDATVKTYLGRPWRIFSTVAVLQSFIGDLVDPAGWWEGETGLSYREYQNRGPG. 263
9 -5.720PF04364.13; Q12AW4_POLSJ/1-134; DNA polymerase III chi subunit, HolC  ali follow..  17  6...FHFNVPDKLAYGCRLLRKAYLSGASVVVTAEADVLAQLDQSLWSFSPTEFVPHCRSDAGEDEVLVNLGQGIPAGFERFERFIEVVAQGDDERLAARSRWKHYTDRGYTMK............................................................. 134
10 -5.660PF10078.9; Q03S11_LACBA/1-89; Uncharacterized protein conserved in bacteria (DUF2316 topsan)  ali follow..  16  3.............................................................................LTISEEQATRKELQANFKLSGLTVDQVAADLQTTLELRVSRIEDPWILRNYLNAAIQAQKQHPIP--YSRLNGSPLRHW-------FLN........ 89
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;