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Query: [D] KOG4259 Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPESDVTKMKVADLKRELKLRGLAVNGNKTELQDRLQTALLEGDLSLEDSAIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEEKTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDSTGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPPAVANTATAVAVAINKSSSASITANKGNKETEEQQKEALKKRAERFGFVVPDKAPTSKADDRLQKRKERFGAGAVSAATTTPTTTESKDAWSEKARARLERFKTAPSTNLast
1 -14.900PF02037.27; A7TT99_VANPO/28-62; SAP domain  ali follow..  37  1.....LENLKVSELKTICRAIQLTISGRKAELQDRIKDYL............................................................................................................................................................................................................................................................................ 35
2 -10.700PF10208.9; F7C1L4_XENTR/46-191; Degradation arginine-rich protein for mis-folding  ali follow..  23  99LSTVDLKKLKVKELKKILDDWGESCKGEKSDFIRKINELMPK.......................................................................................................................................................................................................................................................................... 142
3 -9.400PF07766.13; D8SVL7_SELML/92-360; LETM1-like protein  ali follow..  15  214IQTEGIDSLSEPELVSACRERGILEITSVDELKQQLRNWLDLSLNHALPSS................................................................................................................................................................................................................................................................. 264
4 -8.550PF08690.10; G3ATM9_SPAPN/9-310; GET complex subunit GET2  ali follow..  15  1....ELTEAEKRQLLRERRKAKMAKGQAS----DRLNNILSQGSSVKTNVKSVLDEEESVAKATSPSLSNEEDDPEIQDITSIAMQPPISPTPPIGEGTPEDIDA........................................................................................................................................................................................................... 97
5 -8.280PF14000.6; O64323_BPN15/3-141; DNA packaging protein FI  ali follow..  16  8.........RLNELGTQL--REVSTSGTIQELTMRIAELEEELDGDATSVDGESGGQNAADSTDSTDSTDSTDSTDSDVADVEKVKSE............................................................................................................................................................................................................................ 85
6 -7.460PF14963.6; H3DF96_TETNG/13-269; Calcium signal-modulating cyclophilin ligand  ali follow..  8  3...........AQKRAEIRRRKLLMNSE-----ERMNRIVGCTTNSSENHEPRFHLDLDRTEPVSSSSSPKRSSAHGSRSHSATPERRASPLPGFSESLGGSLEDDLAGIRKRTRGDRVSDDLNSSARPGLQKYLSRFDDAMKLRGQLASEKPVQDRGSDA................................................................................................................................................... 147
7 -7.390PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain  ali follow..  18  1...MKISKLKLKNFRSSFEN-GRNDIG-KSTILEALDIFFNEGKGVVKLEAND............................................................................................................................................................................................................................................................... 59
8 -7.220PF15328.6; A0A2I2Y892_GORGO/27-241; Putative GRINL1B complex locus protein 2  ali follow..  17  7.........RLLRNEKFICK--LPDKGKKFDSFAKLKAAIAECEEVRRKSE................................................................................................................................................................................................................................................................. 47
9 -7.000PF13297.6; A0A1X7VNS6_AMPQE/247-306; Telomere stability C-terminal  ali follow..  25  8.SHEELMSLGLDRLKSALMAQGLKCGGTLEERAKRL................................................................................................................................................................................................................................................................................ 42
10 -6.960PF15741.5; U3I1Q0_ANAPL/22-754; Ligand-dependent nuclear receptor-interacting factor 1  ali follow..  18  696LTPPDLDE-KIKRLKQLLRER-------EAAL-EEMRRKMQQ.......................................................................................................................................................................................................................................................................... 733
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.