current user: public
If you have questions about the server, please let us know.

Query: [S] KOG4823 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .
# Score Template Links and tools%idFirst MPSRRGGGGTTKRKHSLGNLRRAHPASGATWNVQVVRGKMSSKCLWHACRALILGLTLMLLGAGMATLGYYADHLSMGSELRGNVTVRVKNDLKGFHLNNFAYVGPIVMGFGGFIVVASCVMTFEARDSAAKVVPARLRAGGGGSSKNPSRSNQGSSASQRRGMGAQYQSSRWDQHFGVFRSSPGDPHQQPQTACISTTHPHQHSHPQQPFDREALTAELVQFSSASNRFCPQWRRLSGAGSAPDLSGSHAHANTTNSTNATNHQNPTTTVTTNYYNLLSLNRLSPLDWELYCSHRRHRRHHHRHSHHHHHHHHKSSSSSVRRVRPVRPGLGAGSQPSGGGGGGGGGGAGSSSSARIISNSSSLIQRATRECSLLQPPAASRVYWQASSFDGGSNHPPGLGMSSGAEKRSERNKRSDTAKRHVLSRQRPIEQEEARDHSRSPLGHRRNSTMSDSSYSGRWTARCASMASRTSSIESRRVQVDLHSPEVMPKSILRSPKRYSSGPSATPSVEKEFRSQLSVCSEPPPPVRQLSGQSSMEPAVPEESLDQSEEQEETTQPKASYEEITELQHHTSSLPPKKARPGFLPLARSEQEEDPRPVANPLYRSNSSRQFYRPKKGVPNERDDSVFYIRSMERGLAENGGCGSADEQRYDSLRVINERRTTLLKADSQGSLGSAERKLSSFSLKMPEITERENSIEIEIDADELHPSTPPSPPPPPTQPGNSHTTESIQDQDPLast
1 -39.200PF10177.9; W5KY66_ASTMX/13-159; Uncharacterised conserved protein (DUF2371 topsan)  ali follow..  24  4.........SLRTKNRAENKRRRKARKKRKNDIVVVKGKLNLCSVSGMAAAF--GVLVLMVGIAMAVLGYWPRENLAVNDATINSTKPIPPASRHQYSDNLKVFGPLVMGIGIFLFICANAVLHENRDKKTKIINLR...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 147
2 -11.900PF14927.6; C3ZI62_BRAFL/87-231; Neurensin  ali follow..  23  44....................................KPRKSTYIWWKV--AMVCGFSLIAFGAVALMAGYLVPQRRELVGYLGGVPV-VDSAATDLNLDACKLAGLILLCVGGLTVAFSLLVP.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 129
3 -9.480PF15029.6; H0VXD9_CAVPO/9-242; Transmembrane protein 174  ali follow..  25  12........................PYTPSTADIQVSDDDKAGATL------LFSGIFLGLVGITFTVMGWI------------------YQSVSHFEWTQL--LGPILLSVGVFILIAVCMLSCQLCKESEERVPDSEQTSGGQS.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 111
4 -8.980PF14387.6; A3DFQ8_CLOTH/12-126; Domain of unknown function (DUF4418 topsan)  ali follow..  21  27..........................................RCQATAKAELVLGILTIAVGVLMLLI--FRIGLNIAAIPIGILAFLFPNSITG-HMTCRALTLPVLSLTGIALVVFAGINTV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 114
5 -8.130PF16311.5; H2L5R6_ORYLA/1-133; Transmembrane protein 100  ali follow..  16  1MPEEVNKDAMRTPSTSDKATNSERPAATAT-QLTAATGGAELSC--YRC-TIPFGVVVLIAGIVVTVVAY----------------------SFNSHGSTISYFGLVLLSAGLLLLASSAIC--RRRESQTVLVTNQ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 129
6 -7.950PF07271.11; P32_MYCGA/2-289; Cytadhesin P30/P32  ali follow..  17  1..............................FSLKKLKSKL-------------VGVSFVFSGVALGTVG-----LTSEHKYEHSPTLVLTNSVGPRKITSEPWFYPVVGAGAGLIVV--SLLL.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 79
7 -7.560PF04133.14; R7YIF8_CONA1/7-125; Vacuolar protein sorting 55  ali follow..  15  1............................................IIALSFVLAIGFLLVILSSALVVATYVVAPLPNWICGRAANPDDLFESSGSGVIDFGRFL-PVIFAHCAFIVPTAAVMSIIG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 100
8 -7.410PF13886.6; U7Q2T1_SPOS1/25-230; Domain of unknown function (DUF4203 topsan)  ali follow..  18  1....................................................VGGVLMLLTGVVYALVGAYLASLGTTVLVIYVMSPPISNAIQGAYLVAAVCTG-LILGLGGFCF-SMWLLCVRQQSLSGIII......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 112
9 -7.360PF13631.6; Q4JWC3_CORJK/115-288; Cytochrome b(N-terminal)/b6/petB  ali follow..  13  8................................VHMMRIRKPREANW------VIGCVLLLLSVAEGFMGYS---LPDDLLSGVGLRIMSA-------MVGLPVIGTWLHWIAGDFPGEIIIPRLYI---HVLLIPG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 102
10 -7.300PF14325.6; R4LBF9_9ACTN/18-142; Domain of unknown function (DUF4383 topsan)  ali follow..  26  4..................................................ALAVGLVFLLVG----ILGFVPSALSFAGHHSGAKLLGVFEVS----LHNIVH---LLFGIAGLALVLWLYGLVIHQDSAANFVPV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 104
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.