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Query: [P] COG0004 Ammonia permease, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFQKILIIGVSTLLLLTSPIMGNAWAQVPGTTPPADTGDTAFMLISAALVLLMTPGLAFFYGGFVRSRNILNTLMMSFVLMAIVGVTWVLWGYSLSFAPGLPFIGGLQWFGLNGVGLETTGYLQGSEPANVVSYAGTIPHQAYMIYQAMFAIITPALISGAIAERMSFRAYCLFVLLWSTFIYTPLAHMVWAKGGFLGLYGGLGALDFAGGTVVHISSGVSALVAAIVLGPRKTHPDRLSPPHNVTFILLGAGLLWFGWFGFNAGSALSVASSTSGSFITNPATTAFVATNTSAAAGALMWLILEGVLRGKPTAVGAATGAVAGLVGITPAAGFVTPLASILIGFITAFVCFYAVSFKHKLNVDDALDTYPVHGVGGTVGAILTAFFATAEVNSGGKNGVLKGNFGELGVELAAIVIAYVIAAVGTWIILKIIDATVGLRVKEEAEYQGLDISEHGEEAYNSEFSDRIVPLast
1 -113.000d2b2ha_ f.44.1.0 (A:) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  43  1..................................MSDGNVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALLS--------------------GVKGEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGG----GWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAAND---------VAINAVVVTNTSAAVAGFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGY--AGLLFGNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHEEVAYT......... 391
2 -108.000d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  42  1................................AVADKADNAFMMICTALVLFMTPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEGNNFFGNINWLMLKNI--------------ELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGG----GLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE---------IAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVG-FAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV............................. 383
3 -7.470d3ag3c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  14  12.......................................SPWPLTGALSALLMTSGLTMWFHF-----NSMTLLMIGLTTNMLTMYQWW-YGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFTGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWY--VDVVWLFLYVS................................................................................................................................................................................................................ 253
4 -5.310d2j43a2 b.3.1.3 (A:112-223) Pullulanase PulA {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  10  18......................................................................................................................................................................................YDNLAVWTFKDVDWPNGLDLSHKGHYGAYVDVPLKEGANEIGFLILDKSKTGDAIKVQPKDYLFKELDNHTQVFV..................................................................................................................................................................................................................... 97
5 -5.190d2vu9a1 b.29.1.6 (A:875-1079) automated matches {Clostridium botulinum [TaxId: 36826]}  ali model 3D-neighbors follow..  3........................................................................................................................................................................................SILNLRYESN---------HLIDLSRYASKINIGSKVNFDPID--KNQIQLFNLESSKIEVILK---STSFWIGWVSLNYGEIIWTLQDTQEIKQRVVFKYSQMINISDYIN---RWIFVTITNNRLNNSKIYINGRLIDQKPIS-NLGNIHASNNIMFKLDGCRDTHRY-------WIKY......................................................................................................... 197
6 -4.770d2j43a1 b.3.1.3 (A:5-111) Pullulanase PulA {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  12  18......................................................................................................................................................................................LGSLGLWVWGDVNGAITMTKAKKDDYGYYLDVPLAAKHRQQVSYLI---NNKAGENLSKDQHISLLTPKMNEVWI..................................................................................................................................................................................................................... 97
7 -4.400d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]}  ali model 3D-neighbors follow..  13  22........................................................................................................................................................................................TILNLDINND----------ISDISGFNSSVITYPDAQLVPAIHLVNNESSEVIVHKAMDIEYNDMFNNFTVSFWLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAWVFITITNDRLSSANLYINGVLMGSAEIT-GLGAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKALNPKEIEKL............................................................................................... 241
8 -4.310d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  15.............................................................................................................................................................................................................................................................................................................................................................................................................SAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIP 89
9 -4.240d3bq7a1 a.60.1.0 (A:1-67) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  5..............................................................................................................................................................................................WGTEEVAAWLEHLSLCEYKGSGLLHLERRDLKDLGVTKVGHMK............................................................................................................................................................................................................................................. 56
10 -4.160d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]}  ali model 3D-neighbors follow..  14  54................................................................................................................................................................................................................................................................SKWIGIALGGAHNNDLNGNQIVSSTRWATGYVQPTAYTGTATLTTLPETTINSTHWKWVFRCQGCTEWNNGGGIDVT-------------SQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGIDYSTAHSANY............................................................................... 181

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.