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Query: [I] COG0170 Dolichol kinase, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFHPRAACFYLFPLPQNSMKTLLLCGAPLDIVDFMVGTVALEAHGKSFGALERYVVMAILKHIERKLWIGSPLLGVKYTITTGAYKPLLTKISECLAIVDIPGYILHVLDEIRQAPYAFVEIGCILLACLLAQVLLLRSPCTNLKRKTFHLFAFLVFYKEHRVSFLLAEGLLLFMSLLSSCRYTNSLLRPFFSRNDKGRTLLSPIYLLSACMYPRLFIEDVEYVSALISICFQDSAASIAGKWFGVTEKSIQGAIAGVISGTVVYFALYGRIDMLPFFIFAGSVEYLVPINDNITIPLFAVLYFQAPEKACFSSIPSLast
1 -7.320d1f0la3 f.1.2.1 (A:201-380) Diphtheria toxin, middle domain {Corynebacterium diphtheriae [TaxId: 1717]}  ali model 3D-neighbors follow..  10  72.............................................................................................................................................................................VFAGANYAAWAVNVAQVIDSETADN-------------------LEKTTAALSILPG-IGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVG-IGFAAYNFVESIINLFQVVHNSYNRPAY.................. 180
2 -5.460d3hola1 f.4.1.3 (A:131-294) Transferrin binding protein TbpB barrel {Actinobacillus pleuropneumoniae [TaxId: 715]}  ali model 3D-neighbors follow..  14  117........................................................................................................................................................................................................................................SADSQSLEGGFYGPKAEEMAGKFVA------------------LFAVFSAKHNGSNVDTVRI....................... 164
3 -5.400d2cjqa_ e.8.1.4 (A:) automated matches {Bovine viral diarrhea virus [TaxId: 11099]}  ali model 3D-neighbors follow..  9  178.................................................................................................................................VSDDWQSGDLVDEKKPRVITRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFNKVRKEWDLFNEKNWDTQVTSRDLRLIGEIQKYYYRKEWHKFIDTITDHMVEVPVITADGEVYIRNGQRGSGQPDSMLNVLTMMYAFCESTGVPYKSFNNRVARIHVCGDDGFLI..................... 363
4 -5.260d4ikva_ f.38.1.3 (A:) Microbial PepT or POT {Geobacillus kaustophilus [TaxId: 1462]}  ali model 3D-neighbors follow..  7  34................................................................................................................................................ERFSYYGMRAILVYYMYYEVS---HLALAIMSIYGALVYMSGIIGGWLADRTSRAVFYGGLLIMAGHIALAIPGGVAALFVSMALIVLGTGVSSIVGDMYKPGDDRRDAGFSIFYMGI---------LGAFLAPLVVGTAGMKYNFHLGFGLAAVGMFLGLVVFVA....... 204
5 -5.200d4bf2a_ d.144.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  53..........................................................................................................................................HEEIALHKHLKH----IVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLILKISDFGTSKRLAGINPCTEEFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPE 235
6 -4.910d2eyqa1 b.34.18.1 (A:466-545) Transcription-repair coupling factor, RRCF, middle domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  9  1..........................................................................................................................................................................................................................NPDTLIRNLAELHIGQPVVHLVGRYAGMTTLEAGGITGEYLMLTYAN-------------------------DAKLYVPVSS---LHLISRYAGGA... 71
7 -4.900d3fmua_ a.93.1.0 (A:) automated matches {Pleurotus eryngii [TaxId: 5323]}  ali model 3D-neighbors follow..  10  35.........................................................................................................................................GEEVHESLRLTFH-----AIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKP------------------FVAKHNISAGDFIQFAGAVGVSNCPG-FLGRPDAVAASPDHLVVDSILARMGDAGFSPVEVVSLLAS................................... 168
8 -4.750d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  13  4...................................................................................................................................................................................................................................MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHSKVRP..................... 73
9 -4.740d2bsqe1 a.43.1.8 (E:2-70) Trafficking protein A {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  5  1................................................................................................................................................................................................................................ASVVIRNLSEATHNAIKFRARAAGRSTEAEIRLILDNIA...................................................... 39
10 -4.740d1ii2a2 c.109.1.1 (A:2-200) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}  ali model 3D-neighbors follow..  7  107...........................................................................................................................................................................VRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTSTTCVALNFKTREQVILGTEYGEMKKGILTVMFELM.......................................................... 195
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.